| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0.42 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 1,039 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'False negative' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 531 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'False positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0.51 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'Positive predictive value' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0.35 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive rate' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, conventional RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 560 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0.36 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 178 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'False negative' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 14 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'False positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0.8 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'Positive predictive value' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0.24 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive rate' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: All fusions, targeted RNA-seq of haematologic cell lines, consensus truth (Tamura et al. 2026 Supplementary Table 3) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 55 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on all fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-all-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 3, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0.76 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 24 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'False negative' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'False positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 1 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'Positive predictive value' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 0.61 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive rate' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines) | 37 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-conventional Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0.86 f1-score fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 6 false-negative-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'False negative' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0 false-positive-count count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'False positive' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 1 precision fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'Positive predictive value' (PDF page text) |
|---|
| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 0.75 recall fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive rate' (PDF page text) |
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| Configuration: TrinityFusion-C v0.3.4 (Tamura et al. 2026) | Protocol: Driver fusions, targeted RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5) Dataset: Haematologic cancer cell lines, hybridisation-capture targeted RNA-seq (26 cell lines) | 18 true-positive-count count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTrinityFusion-C on driver fusions, targeted RNA-seq (Tamura et al. 2026) rna-fusion-20261009-protocol-tamura2026-driver-targeted Aggregation: Not reported Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Targeted RNA-seq of cell lines', row 'TrinityFusion-C', column 'True positive' (PDF page text) |
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