0.76 f1-score
tamura2026-trinityfusion-c-driver-conventional f1-score (driver fusions, conventional RNA-seq of cell lines)
- Tested configuration
- TrinityFusion-C v0.3.4 (Tamura et al. 2026)
- Protocol
- Driver fusions, conventional RNA-seq of haematologic cell lines, validated truth (Tamura et al. 2026 Supplementary Table 5)
- Dataset
- CCLE haematologic malignancy cell lines, conventional RNA-seq (170 cell lines)
- Procedure
- rna-fusion-20261009-protocol-tamura2026-driver-conventional
- Evaluation
- TrinityFusion-C on driver fusions, conventional RNA-seq (Tamura et al. 2026)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedComparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies; Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- All cell lines
- Adaptation
- Not reported
- Scoring implementation
- Gene pair and orientation match after HGNC alias resolution (Methods)
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.76 Individual claims | Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: NPJ Precision Oncology 10:199, published 2026-04-04; PMC13230599 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsExtracted by deterministic parse of the pinned supplementary PDF text layer (pdftotext version 26.08.0, -layout) in extract/extract_rna_fusion.py, with table titles, sub-table headings, column headers and algorithm labels asserted. printed_value is the cell as printed, including thousands separators. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
| Reported result 0.76 Individual claims | Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text) Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 41698_2026_1397_MOESM1_ESM.pdf as served by the publisher | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 independent paper Audit detailsExtracted by deterministic parse of the pinned supplementary PDF text layer (pdftotext version 26.08.0, -layout) in extract/extract_rna_fusion.py, with table titles, sub-table headings, column headers and algorithm labels asserted. printed_value is the cell as printed, including thousands separators. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-09-ba02f2f4a36e · Record review: source checked
2 source records and release history
- Comparison of gene fusion detection algorithms reveals frequently overlooked driver fusions in hematologic malignancies · Original source · NPJ Precision Oncology 10:199, published 2026-04-04; PMC13230599 full-text XML
- Tamura et al. 2026, Supplementary Information (Supplementary Tables 1-12) · Original source · 41698_2026_1397_MOESM1_ESM.pdf as served by the publisher
Technical metadata and extraction receipts
Stable ID: rna-fusion-20261009-result-tamura2026-trinityfusion-c-driver-conventional-f1-score
- metric
- f1-score
- metric direction
- higher
- unit
- fraction
- metric qualifier
- driver fusions, conventional RNA-seq of cell lines
- printed value
- 0.76
- source locator
- Supplementary Table 5, 'Conventional RNA-seq of cell lines', row 'TrinityFusion-C', column 'F1' (PDF page text)
- missing metadata
- uncertainty: reason: unreported
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Re-downloaded the supplementary PDF and matched its SHA-256. Read the text layer with pdftotext -layout and a separate row parser written for this review (the extractor's script was not imported or run). Checked printed and numeric value, metric, qualifier, unit and direction from the table, sub-table and column, the algorithm label and the linked configuration and protocol. TPR, PPV and F1 were recomputed from TP, FP and FN (all within rounding), and TP plus FN equals the printed truth-set size or the driver truth count on every row.; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: f18ada098fd03b0842c63a8ab9d13002e1876b006243e42c640a118ea3ab3275; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41698-026-01397-y/MediaObjects/41698_2026_1397_MOESM1_ESM.pdf; note: Extracted by deterministic parse of the pinned supplementary PDF text layer (pdftotext version 26.08.0, -layout) in extract/extract_rna_fusion.py, with table titles, sub-table headings, column headers and algorithm labels asserted. printed_value is the cell as printed, including thousands separators. Pending independent review. Independent review 2026-10-09: value and identity match the source.
- numeric value
- 0.76