RAbD (natural)
Protein model evaluated by the ProteinBench authors under their harness.
Overview
Protein model evaluated by the ProteinBench authors under their harness.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
12 evaluations · 12 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: RAbD (natural) | Task: ProteinBench AB-ACCURACY-AAR: Accuracy AAR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 100% aar percent · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-ACCURACY-AAR: Accuracy AAR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Accuracy AAR ↑) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0 rmsd score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Accuracy RMSD ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 1 tm-score score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Accuracy TM-score ↑) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | -15.3 binding-energy score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Functionality Binding Energy ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.07 clashes-inner score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality Clashes-inner ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0 clashes-outer score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality Clashes-outer ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 50.2 cn-score score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality CN-score ↑) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 1.77 scrmsd score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality scRMSD ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | -1.74 seqnat score · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality SeqNat ↑) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | -16.8 total-energy score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Rationality Total Energy ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 45.8% phr percent · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Specificity PHR ↓) |
| Configuration: RAbD (natural) | Task: ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Dataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) | 0.26 seqsim-outer score · lower Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRAbD (natural) on ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer Antibody design on the 55 antibody-antigen complexes of the RAbD set. Aggregation: Not reported proteinbench primary benchmark evidence · Table 6, row(RAbD (natural)), column(Specificity SeqSim-outer ↓) |
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Sources and history
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Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-method-rabd-natural
- areas
- proteins-complexes
- source locator
- Table 6, row(RAbD (natural))
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- model: RAbD (natural) on ProteinBench AB-ACCURACY-AAR: Accuracy AAR
- model: RAbD (natural) on ProteinBench AB-ACCURACY-RMSD: Accuracy RMSD
- model: RAbD (natural) on ProteinBench AB-ACCURACY-TM-SCORE: Accuracy TM-score
- model: RAbD (natural) on ProteinBench AB-FUNCTIONALITY-BINDING-ENERGY: Functionality Binding Energy
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-CLASHES-INNER: Rationality Clashes-inner
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-CLASHES-OUTER: Rationality Clashes-outer
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-CN-SCORE: Rationality CN-score
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-SCRMSD: Rationality scRMSD
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-SEQNAT: Rationality SeqNat
- model: RAbD (natural) on ProteinBench AB-RATIONALITY-TOTAL-ENERGY: Rationality Total Energy
- model: RAbD (natural) on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR
- model: RAbD (natural) on ProteinBench AB-SPECIFICITY-SEQSIM-OUTER: Specificity SeqSim-outer