rewirebio.iobenchmarks
Configuration

NVIDIA Parabricks DeepVariant v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025)

DV.v4.3.0-1 column of Supplementary Table S4.

1 evaluation · 3 results

Overview

DV.v4.3.0-1 column of Supplementary Table S4.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 3 results. Different protocols are not a single leaderboard.

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Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: NVIDIA Parabricks DeepVariant v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025)Protocol: Parabricks DeepVariant v4.1.0-1 versus v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)
Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage
16.1 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Parabricks DV.v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)

model-execution-20261009-protocol-samarakoon2025-dv-version-h100

Aggregation: Not reported

Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S4, row 'NA12878', column 'Parabricks DV.v4.3.0-1' (PDF page text)
Configuration: NVIDIA Parabricks DeepVariant v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025)Protocol: Parabricks DeepVariant v4.1.0-1 versus v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)
Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage
16.1 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Parabricks DV.v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)

model-execution-20261009-protocol-samarakoon2025-dv-version-h100

Aggregation: Not reported

Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S4, row 'NA12890', column 'Parabricks DV.v4.3.0-1' (PDF page text)
Configuration: NVIDIA Parabricks DeepVariant v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025)Protocol: Parabricks DeepVariant v4.1.0-1 versus v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)
Dataset: Ten WGS samples: six Illumina Platinum pedigree high-coverage and four 1000 Genomes phase 3 low-coverage
17.9 runtime
minute · lower

Uncertainty: Not reported by the source: Single recorded run per cell; no repeats or intervals printed

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Parabricks DV.v4.3.0-1 on 8 H100 GPUs (Samarakoon et al. 2025 Table S4)

model-execution-20261009-protocol-samarakoon2025-dv-version-h100

Aggregation: Not reported

Benchmarking accelerated next-generation sequencing analysis pipelines; Samarakoon et al. 2025, supplementary materials (Tables S1-S4, supplementary texts) · Supplementary Table S4, row 'NA12892', column 'Parabricks DV.v4.3.0-1' (PDF page text)

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Release 2026-10-09-8cc1db47c7f9 · Record review: source checked

2 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: model-execution-20261009-config-samarakoon2025-parabricks-4-3-0-1-8xh100

areas
dna-genomes
contexts
clinical_research
method types
conventional_pipeline
foundation model eligible
false
reported name
Parabricks DV.v4.3.0-1
version
4.3.0-1
protocol
Parabricks DeepVariant
hardware
description: 8 NVIDIA H100 (80 GB, 640 GB GPU memory in total), 1,872 GB RAM, GPFS, Google Cloud A3 VM, NVLink; host CPU per GPU type not stated
source locator
Supplementary Table S4 column header
model identity note
Supplementary Table S4 header and introduction print DV.v4.3.0-1 for the updated version; the Table S4 introduction cites the Parabricks 4.3.1-1 release notes, and Discussion paragraph 10 says the three comparison runs used DV.v4.3.1-1. Version recorded as printed in Table S4.
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