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evo2_1b_base_absLLR.plus.score (TraitGym)

evo2_1b_base scored as 'absolute log-likelihood ratio' in TraitGym.

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2 evaluations · 2 results. Different protocols are not a single leaderboard.

Sorted by AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all')
evo2_1b_base_absLLR.plus.score (TraitGym)Evaluation	TraitGym Mendelian traits, zero-shot, AUPRC by chromosome weighted average, TraitGym Mendelian traits, matched 9 controls	0.159 (best in column)
evo2_1b_base_absLLR.plus.score (TraitGym)Evaluation	TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average, TraitGym Complex traits, matched 9 controls	0.0976

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: evo2_1b_base_absLLR.plus.score (TraitGym)	Protocol: TraitGym Complex traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Complex traits, matched 9 controls	0.0976 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.002187413511062486 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_absLLR.plus.score on TraitGym complex_traits_matched_9 lit-genomics-20261011-traitgym-protocol-complex-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · complex_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_absLLR.plus.score.csv, column 'score' (standard error in column 'se')
Configuration: evo2_1b_base_absLLR.plus.score (TraitGym)	Protocol: TraitGym Mendelian traits, zero-shot, AUPRC by chromosome weighted average Dataset: TraitGym Mendelian traits, matched 9 controls	0.159 AUPRC (weighted average over chromosomes of per-chromosome AUPRC; subset 'all') unitless · higher Uncertainty: SE 0.031111541939277777 Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source evo2_1b_base_absLLR.plus.score on TraitGym mendelian_traits_matched_9 lit-genomics-20261011-traitgym-protocol-mendelian-traits-matched-9-zero-shot Aggregation: Not reported TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · mendelian_traits_matched_9/AUPRC_by_chrom_weighted_average/all/evo2_1b_base_absLLR.plus.score.csv, column 'score' (standard error in column 'se')

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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TraitGym official metrics: AUPRC by chromosome, weighted average (Hugging Face dataset songlab/TraitGym) · Original source · Hugging Face dataset revision 1fde19555fe8c0a55b1382bdf4c6f7082209f566 (last modified 2025-03-25); 156 metric CSVs under {dataset}/AUPRC_by_chrom_weighted_average/all/

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-traitgym-config-evo2-1b-base-absllr-plus-score

areas: dna-genomes
contexts: research
method types: foundation_model
reported name: evo2_1b_base_absLLR.plus.score
foundation model eligible: true
parameters: Evo2 1B base; absolute log-likelihood ratio
access reuse: Public weights or score files (paper Appendix B.1)
source locator: File name 'evo2_1b_base_absLLR.plus.score.csv'; config/models.csv; paper Table S5
missing metadata: version: reason: unreported; note: Only the label in the file name identifies the model

Related records

configuration of: Evo 2
system: evo2_1b_base_absLLR.plus.score on TraitGym complex_traits_matched_9
system: evo2_1b_base_absLLR.plus.score on TraitGym mendelian_traits_matched_9

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