DNABERT-1, fine-tuning (NT benchmark)
DNABERT-1, fine-tuning: fine-tuning.
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Evaluations and results
1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT-1, fine-tuning (NT benchmark) | Protocol: NT benchmark normalised summed performance (Supplementary Table 9) Dataset: NT benchmark, all 18 tasks | 0.511 MCC (mean over three task categories of median cross-validation MCC) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-1 (Finetuning) NT benchmark normalised summed performance lit-genomics-20261011-ntbench-protocol-normalised-summed-performance Aggregation: Not reported Nucleotide Transformer: Supplementary Information (Supplementary Tables 1-12) · Supplementary Table 9, row 'DNABERT-1', approach 'Finetuning', column 'Average performance' |
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Evidence
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Nucleotide Transformer: Supplementary Information (Supplementary Tables 1-12) · Original source · Nature Methods 22, 287-297 (published online 2024-11-28); Supplementary Information PDF (MOESM1, 25 pages)
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-ntbench-config-dnabert-1-fine-tuning
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- DNABERT-1
- foundation model eligible
- true
- parameters
- fine-tuning; hyperparameters in Supplementary Tables 1 and 8
- access reuse
- Not stated in the tables
- source locator
- Supplementary Tables 6, 7 and 9 row labels
- limitations
- Supplementary Table 9 says only 'Finetuning' for DNABERT-1; whether parameter-efficient fine-tuning was used is not stated, and DNABERT-1 has no per-task row in Supplementary Table 7.
- missing metadata
- version: reason: unreported; note: Row label gives training data and parameter count only
- provenance note
- DNABERT-1 as evaluated in the NT benchmark, fine-tuning.
Related records
- configuration of: DNABERT
- system: DNABERT-1 (Finetuning) NT benchmark normalised summed performance