LucaOne-default-step36M (GENEB leaderboard)
LucaOne-default-step36M: frozen embeddings; leaderboard display name 'LucaOne-default-step36M'.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
3 evaluations · 45 results. Different protocols are not a single leaderboard.
Dataset: GENEB 100 tasks
Sorted by MCC (1-shot; category 'Chromatin Acc.') (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | MCC (1-shot; category 'Chromatin Acc.') | MCC (1-shot; category 'Coding/NC') | MCC (1-shot; category 'DNA Methyl.') | MCC (1-shot; category 'Enhancers') | MCC (1-shot; category 'Histone Mod.') | MCC (1-shot; category 'lncRNA') | MCC (1-shot; category 'Mouse Enh.') | MCC (1-shot; category 'Promoters') | MCC (1-shot; category 'Regulatory') | MCC (1-shot; category 'Species Clf.') | MCC (1-shot; category 'Splice Sites') | MCC (1-shot; category 'TF Binding') | MCC (1-shot; category 'Virus/Phage') | MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (1-shot; micro average: mean over all 100 tasks) | MCC (10-shot; category 'Chromatin Acc.') | MCC (10-shot; category 'Coding/NC') | MCC (10-shot; category 'DNA Methyl.') | MCC (10-shot; category 'Enhancers') | MCC (10-shot; category 'Histone Mod.') | MCC (10-shot; category 'lncRNA') | MCC (10-shot; category 'Mouse Enh.') | MCC (10-shot; category 'Promoters') | MCC (10-shot; category 'Regulatory') | MCC (10-shot; category 'Species Clf.') | MCC (10-shot; category 'Splice Sites') | MCC (10-shot; category 'TF Binding') | MCC (10-shot; category 'Virus/Phage') | MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (10-shot; micro average: mean over all 100 tasks) | MCC (full training data; category 'Chromatin Acc.') | MCC (full training data; category 'Coding/NC') | MCC (full training data; category 'DNA Methyl.') | MCC (full training data; category 'Enhancers') | MCC (full training data; category 'Histone Mod.') | MCC (full training data; category 'lncRNA') | MCC (full training data; category 'Mouse Enh.') | MCC (full training data; category 'Promoters') | MCC (full training data; category 'Regulatory') | MCC (full training data; category 'Species Clf.') | MCC (full training data; category 'Splice Sites') | MCC (full training data; category 'TF Binding') | MCC (full training data; category 'Virus/Phage') | MCC (full training data; macro average: unweighted mean of the 13 category MCCs) | MCC (full training data; micro average: mean over all 100 tasks) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LucaOne-default-step36M (GENEB leaderboard)Evaluation | GENEB leaderboard, 1-shot, MCC aggregates | 0.15 | 0.375 | 0.0148 | 0.16 | 0.0957 | 0.0554 | 0.0698 | 0.287 | 0.0352 | 0.176 | 0.0774 | 0.092 | 0.0798 | 0.128 | 0.136 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| LucaOne-default-step36M (GENEB leaderboard)Evaluation | GENEB leaderboard, 10-shot, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.478 | 0.746 | 0.0665 | 0.304 | 0.25 | 0.178 | 0.257 | 0.538 | 0.183 | 0.391 | 0.298 | 0.254 | 0.267 | 0.324 | 0.313 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| LucaOne-default-step36M (GENEB leaderboard)Evaluation | GENEB leaderboard, full training data, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.662 | 0.901 | 0.323 | 0.479 | 0.533 | 0.508 | 0.597 | 0.746 | 0.492 | 0.662 | 0.636 | 0.605 | 0.519 | 0.589 | 0.579 |
All 45 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.478 MCC (10-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Chromatin Acc.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.746 MCC (10-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Coding/NC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0665 MCC (10-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.DNA Methyl.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.304 MCC (10-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Enhancers' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.25 MCC (10-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Histone Mod.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.178 MCC (10-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.lncRNA' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.324 MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'macro_MCC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.313 MCC (10-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'micro_MCC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.257 MCC (10-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Mouse Enh.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.538 MCC (10-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Promoters' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.183 MCC (10-shot; category 'Regulatory') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Regulatory' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.391 MCC (10-shot; category 'Species Clf.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Species Clf.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.298 MCC (10-shot; category 'Splice Sites') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Splice Sites' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.254 MCC (10-shot; category 'TF Binding') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.TF Binding' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.267 MCC (10-shot; category 'Virus/Phage') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'LucaOne-default-step36M', key 'cat_MCC.Virus/Phage' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.15 MCC (1-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Chromatin Acc.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.375 MCC (1-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Coding/NC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0148 MCC (1-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.DNA Methyl.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.16 MCC (1-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Enhancers' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0957 MCC (1-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Histone Mod.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0554 MCC (1-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.lncRNA' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.128 MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'macro_MCC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.136 MCC (1-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'micro_MCC' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0698 MCC (1-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Mouse Enh.' |
| Configuration: LucaOne-default-step36M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.287 MCC (1-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceLucaOne-default-step36M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'LucaOne-default-step36M', key 'cat_MCC.Promoters' |
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · Original source · Git commit 9642d481e40c0af23995dcd162b779613f789f97 (repository pushed 2026-08-22)
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-geneb-config-lucaone-default-step36m
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- LucaOne-default-step36M
- foundation model eligible
- true
- parameters
- 2000000000 parameters as listed; frozen embeddings; leaderboard display name 'LucaOne-default-step36M'
- access reuse
- Public checkpoint as named on the leaderboard
- version
- LucaOne-default-step36M
- source locator
- leaderboard.json data.full row model 'LucaOne-default-step36M'
- provenance note
- LucaOne-default-step36M as evaluated on the GENEB leaderboard.
Related records
- configuration of: LucaOne
- system: LucaOne-default-step36M on GENEB (10-shot)
- system: LucaOne-default-step36M on GENEB (1-shot)
- system: LucaOne-default-step36M on GENEB (full training data)