GenomeOcean-500M (GENEB leaderboard)
GenomeOcean-500M: frozen embeddings; leaderboard display name 'GenomeOcean-500M'.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
3 evaluations · 45 results. Different protocols are not a single leaderboard.
Dataset: GENEB 100 tasks
Sorted by MCC (1-shot; category 'Chromatin Acc.') (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | MCC (1-shot; category 'Chromatin Acc.') | MCC (1-shot; category 'Coding/NC') | MCC (1-shot; category 'DNA Methyl.') | MCC (1-shot; category 'Enhancers') | MCC (1-shot; category 'Histone Mod.') | MCC (1-shot; category 'lncRNA') | MCC (1-shot; category 'Mouse Enh.') | MCC (1-shot; category 'Promoters') | MCC (1-shot; category 'Regulatory') | MCC (1-shot; category 'Species Clf.') | MCC (1-shot; category 'Splice Sites') | MCC (1-shot; category 'TF Binding') | MCC (1-shot; category 'Virus/Phage') | MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (1-shot; micro average: mean over all 100 tasks) | MCC (10-shot; category 'Chromatin Acc.') | MCC (10-shot; category 'Coding/NC') | MCC (10-shot; category 'DNA Methyl.') | MCC (10-shot; category 'Enhancers') | MCC (10-shot; category 'Histone Mod.') | MCC (10-shot; category 'lncRNA') | MCC (10-shot; category 'Mouse Enh.') | MCC (10-shot; category 'Promoters') | MCC (10-shot; category 'Regulatory') | MCC (10-shot; category 'Species Clf.') | MCC (10-shot; category 'Splice Sites') | MCC (10-shot; category 'TF Binding') | MCC (10-shot; category 'Virus/Phage') | MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (10-shot; micro average: mean over all 100 tasks) | MCC (full training data; category 'Chromatin Acc.') | MCC (full training data; category 'Coding/NC') | MCC (full training data; category 'DNA Methyl.') | MCC (full training data; category 'Enhancers') | MCC (full training data; category 'Histone Mod.') | MCC (full training data; category 'lncRNA') | MCC (full training data; category 'Mouse Enh.') | MCC (full training data; category 'Promoters') | MCC (full training data; category 'Regulatory') | MCC (full training data; category 'Species Clf.') | MCC (full training data; category 'Splice Sites') | MCC (full training data; category 'TF Binding') | MCC (full training data; category 'Virus/Phage') | MCC (full training data; macro average: unweighted mean of the 13 category MCCs) | MCC (full training data; micro average: mean over all 100 tasks) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GenomeOcean-500M (GENEB leaderboard)Evaluation | GENEB leaderboard, 1-shot, MCC aggregates | 0.182 | 0.314 | 0.0138 | 0.162 | 0.126 | 0.028 | 0.0678 | 0.346 | 0.0464 | 0.285 | 0.0637 | 0.134 | 0.0617 | 0.141 | 0.16 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| GenomeOcean-500M (GENEB leaderboard)Evaluation | GENEB leaderboard, 10-shot, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.484 | 0.661 | 0.0469 | 0.303 | 0.282 | 0.114 | 0.183 | 0.522 | 0.148 | 0.611 | 0.128 | 0.283 | 0.34 | 0.316 | 0.306 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| GenomeOcean-500M (GENEB leaderboard)Evaluation | GENEB leaderboard, full training data, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.475 | 0.868 | 0.219 | 0.46 | 0.537 | 0.395 | 0.521 | 0.732 | 0.422 | 0.749 | 0.551 | 0.571 | 0.657 | 0.55 | 0.551 |
All 45 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.484 MCC (10-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Chromatin Acc.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.661 MCC (10-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Coding/NC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0469 MCC (10-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.DNA Methyl.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.303 MCC (10-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Enhancers' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.282 MCC (10-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Histone Mod.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.114 MCC (10-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.lncRNA' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.316 MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'macro_MCC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.306 MCC (10-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'micro_MCC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.183 MCC (10-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Mouse Enh.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.522 MCC (10-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Promoters' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.148 MCC (10-shot; category 'Regulatory') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Regulatory' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.611 MCC (10-shot; category 'Species Clf.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Species Clf.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.128 MCC (10-shot; category 'Splice Sites') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Splice Sites' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.283 MCC (10-shot; category 'TF Binding') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.TF Binding' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.34 MCC (10-shot; category 'Virus/Phage') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'GenomeOcean-500M', key 'cat_MCC.Virus/Phage' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.182 MCC (1-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Chromatin Acc.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.314 MCC (1-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Coding/NC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0138 MCC (1-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.DNA Methyl.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.162 MCC (1-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Enhancers' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.126 MCC (1-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Histone Mod.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.028 MCC (1-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.lncRNA' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.141 MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'macro_MCC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.16 MCC (1-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'micro_MCC' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0678 MCC (1-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Mouse Enh.' |
| Configuration: GenomeOcean-500M (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.346 MCC (1-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGenomeOcean-500M on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'GenomeOcean-500M', key 'cat_MCC.Promoters' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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Evidence
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · Original source · Git commit 9642d481e40c0af23995dcd162b779613f789f97 (repository pushed 2026-08-22)
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-geneb-config-genomeocean-500m
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- reported name
- GenomeOcean-500M
- foundation model eligible
- true
- parameters
- 500000000 parameters as listed; frozen embeddings; leaderboard display name 'GenomeOcean-500M'
- access reuse
- Public checkpoint as named on the leaderboard
- version
- GenomeOcean-500M
- source locator
- leaderboard.json data.full row model 'GenomeOcean-500M'
- provenance note
- GenomeOcean-500M as evaluated on the GENEB leaderboard.
Related records
- configuration of: GenomeOcean
- system: GenomeOcean-500M on GENEB (10-shot)
- system: GenomeOcean-500M on GENEB (1-shot)
- system: GenomeOcean-500M on GENEB (full training data)