enformer-official-rough (GENEB leaderboard)
enformer-official-rough: frozen embeddings; leaderboard display name 'enformer-official-rough'.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
3 evaluations · 45 results. Different protocols are not a single leaderboard.
Dataset: GENEB 100 tasks
Sorted by MCC (1-shot; category 'Chromatin Acc.') (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | MCC (1-shot; category 'Chromatin Acc.') | MCC (1-shot; category 'Coding/NC') | MCC (1-shot; category 'DNA Methyl.') | MCC (1-shot; category 'Enhancers') | MCC (1-shot; category 'Histone Mod.') | MCC (1-shot; category 'lncRNA') | MCC (1-shot; category 'Mouse Enh.') | MCC (1-shot; category 'Promoters') | MCC (1-shot; category 'Regulatory') | MCC (1-shot; category 'Species Clf.') | MCC (1-shot; category 'Splice Sites') | MCC (1-shot; category 'TF Binding') | MCC (1-shot; category 'Virus/Phage') | MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (1-shot; micro average: mean over all 100 tasks) | MCC (10-shot; category 'Chromatin Acc.') | MCC (10-shot; category 'Coding/NC') | MCC (10-shot; category 'DNA Methyl.') | MCC (10-shot; category 'Enhancers') | MCC (10-shot; category 'Histone Mod.') | MCC (10-shot; category 'lncRNA') | MCC (10-shot; category 'Mouse Enh.') | MCC (10-shot; category 'Promoters') | MCC (10-shot; category 'Regulatory') | MCC (10-shot; category 'Species Clf.') | MCC (10-shot; category 'Splice Sites') | MCC (10-shot; category 'TF Binding') | MCC (10-shot; category 'Virus/Phage') | MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) | MCC (10-shot; micro average: mean over all 100 tasks) | MCC (full training data; category 'Chromatin Acc.') | MCC (full training data; category 'Coding/NC') | MCC (full training data; category 'DNA Methyl.') | MCC (full training data; category 'Enhancers') | MCC (full training data; category 'Histone Mod.') | MCC (full training data; category 'lncRNA') | MCC (full training data; category 'Mouse Enh.') | MCC (full training data; category 'Promoters') | MCC (full training data; category 'Regulatory') | MCC (full training data; category 'Species Clf.') | MCC (full training data; category 'Splice Sites') | MCC (full training data; category 'TF Binding') | MCC (full training data; category 'Virus/Phage') | MCC (full training data; macro average: unweighted mean of the 13 category MCCs) | MCC (full training data; micro average: mean over all 100 tasks) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| enformer-official-rough (GENEB leaderboard)Evaluation | GENEB leaderboard, 1-shot, MCC aggregates | 0.226 | 0.148 | 0.0264 | 0.0532 | 0.0598 | -0.000821 | 0.179 | 0.223 | 0.0785 | 0.173 | 0.0171 | 0.129 | 0.0178 | 0.102 | 0.101 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| enformer-official-rough (GENEB leaderboard)Evaluation | GENEB leaderboard, 10-shot, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.501 | 0.442 | 0.0483 | 0.252 | 0.172 | 0.0204 | 0.363 | 0.443 | 0.184 | 0.401 | 0.192 | 0.394 | 0.132 | 0.273 | 0.253 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| enformer-official-rough (GENEB leaderboard)Evaluation | GENEB leaderboard, full training data, MCC aggregates | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.711 | 0.741 | 0.123 | 0.539 | 0.452 | 0.231 | 0.674 | 0.705 | 0.604 | 0.691 | 0.586 | 0.698 | 0.379 | 0.549 | 0.522 |
All 45 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.501 MCC (10-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Chromatin Acc.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.442 MCC (10-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Coding/NC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0483 MCC (10-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.DNA Methyl.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.252 MCC (10-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Enhancers' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.172 MCC (10-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Histone Mod.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0204 MCC (10-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.lncRNA' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.273 MCC (10-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'macro_MCC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.253 MCC (10-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'micro_MCC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.363 MCC (10-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Mouse Enh.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.443 MCC (10-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Promoters' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.184 MCC (10-shot; category 'Regulatory') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Regulatory' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.401 MCC (10-shot; category 'Species Clf.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Species Clf.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.192 MCC (10-shot; category 'Splice Sites') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Splice Sites' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.394 MCC (10-shot; category 'TF Binding') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.TF Binding' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 10-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.132 MCC (10-shot; category 'Virus/Phage') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (10-shot) lit-genomics-20261011-geneb-protocol-10shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.10shot, model 'enformer-official-rough', key 'cat_MCC.Virus/Phage' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.226 MCC (1-shot; category 'Chromatin Acc.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Chromatin Acc.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.148 MCC (1-shot; category 'Coding/NC') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Coding/NC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0264 MCC (1-shot; category 'DNA Methyl.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.DNA Methyl.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0532 MCC (1-shot; category 'Enhancers') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Enhancers' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.0598 MCC (1-shot; category 'Histone Mod.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Histone Mod.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | -0.000821 MCC (1-shot; category 'lncRNA') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.lncRNA' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.102 MCC (1-shot; macro average: unweighted mean of the 13 category MCCs) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'macro_MCC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.101 MCC (1-shot; micro average: mean over all 100 tasks) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'micro_MCC' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.179 MCC (1-shot; category 'Mouse Enh.') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Mouse Enh.' |
| Configuration: enformer-official-rough (GENEB leaderboard) | Protocol: GENEB leaderboard, 1-shot, MCC aggregates Dataset: GENEB 100 tasks | 0.223 MCC (1-shot; category 'Promoters') unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceenformer-official-rough on GENEB (1-shot) lit-genomics-20261011-geneb-protocol-1shot Aggregation: Not reported GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · leaderboard.json data.1shot, model 'enformer-official-rough', key 'cat_MCC.Promoters' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
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Evidence
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Evidence table
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- GENEB leaderboard (leaderboard.json, 13 task-type aggregates) · Original source · Git commit 9642d481e40c0af23995dcd162b779613f789f97 (repository pushed 2026-08-22)
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-geneb-config-enformer-official-rough
- areas
- dna-genomes
- contexts
- research
- method types
- supervised_machine_learning
- reported name
- enformer-official-rough
- foundation model eligible
- false
- parameters
- 252000000 parameters as listed; frozen embeddings; leaderboard display name 'enformer-official-rough'
- access reuse
- Public checkpoint as named on the leaderboard
- version
- enformer-official-rough
- source locator
- leaderboard.json data.full row model 'enformer-official-rough'
- provenance note
- enformer-official-rough as evaluated on the GENEB leaderboard.
Related records
- configuration of: Enformer
- system: enformer-official-rough on GENEB (10-shot)
- system: enformer-official-rough on GENEB (1-shot)
- system: enformer-official-rough on GENEB (full training data)