Configuration

Enformer (DNALONGBENCH, eQTLP)

Configuration of Enformer: Expert model for eQTLP: Enformer.

1 evaluation · 10 results 1 open disagreement between studies involves its model

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 10 results. Different protocols are not a single leaderboard.

Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) · Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set

Sorted by AUROC (AS (Adipose_Subcutaneous)) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	AUROC (AS (Adipose_Subcutaneous))	AUROC (AT (Artery_Tibial))	AUROC (average over eQTLP conditions as printed)	AUROC (CCF (Cells_Cultured_fibroblasts))	AUROC (MS (Muscle Skeletal))	AUROC (NT (Nerve Tibial))	AUROC (SNSES (Skin_Not_Sun_Exposed_Suprapubic))	AUROC (SSELL (Skin_Sun_Exposed_Lower_leg))	AUROC (Thyroid)	AUROC (WB (Whole_Blood))
Enformer (DNALONGBENCH, eQTLP)Evaluation	0.736	0.741	0.681	0.639	0.621	0.683	0.71	0.7	0.612	0.689

All 10 result rows with coverage, uncertainty and sources

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.736 AUROC (AS (Adipose_Subcutaneous)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'AS'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.741 AUROC (AT (Artery_Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'AT'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.681 AUROC (average over eQTLP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'Avg'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.639 AUROC (CCF (Cells_Cultured_fibroblasts)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'CCF'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.621 AUROC (MS (Muscle Skeletal)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'MS'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.683 AUROC (NT (Nerve Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'NT'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.71 AUROC (SNSES (Skin_Not_Sun_Exposed_Suprapubic)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'SNSES'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.7 AUROC (SSELL (Skin_Sun_Exposed_Lower_leg)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'SSELL'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.612 AUROC (Thyroid) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'Thyroid'
Configuration: Enformer (DNALONGBENCH, eQTLP)	Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set	0.689 AUROC (WB (Whole_Blood)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Expert Model on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Expert Model', column 'WB'

Source checking is not independent reproduction. Release 2026-10-23-5347695500ed.

Use this configuration

How it works, versions and access

Additional methodological details, versions and access terms have not yet been extracted into a structured profile for this configuration. Consult the linked sources and evaluation records below.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

0 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-23-5347695500ed
Property and statement	Original source and location	Review and provenance

No evidence rows match these filters. Choose another scope or clear the search.

How to read the evidence

Sources and history

Release 2026-10-23-5347695500ed · Record review: source checked

1 source record and release history

DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Original source · Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-dnalongbench-config-enformer-eqtlp

areas: dna-genomes
contexts: research
method types: supervised_machine_learning
reported name: Expert Model (Enformer)
foundation model eligible: false
parameters: Expert model for eQTLP: Enformer
access reuse: Not stated in the main text
source locator: Methods 'Expert model', 'CNN' and 'DNA Foundation Model'
missing metadata: version: reason: unreported; note: Checkpoint or release not printed beyond the model name
provenance note: Enformer as evaluated in DNALONGBENCH.

Related records

configuration of: Enformer
system: Expert Model on DNALONGBENCH eQTLP

Suggest a correction