Held-out test data for the DNALONGBENCH Expression quantitative trait loci prediction task.
5 evaluations · 50 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.541 AUROC (AS (Adipose_Subcutaneous)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'AS' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.547 AUROC (AT (Artery_Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'AT' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.565 AUROC (average over eQTLP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'Avg' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.597 AUROC (CCF (Cells_Cultured_fibroblasts)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'CCF' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.538 AUROC (MS (Muscle Skeletal)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'MS' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.588 AUROC (NT (Nerve Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'NT' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.586 AUROC (SNSES (Skin_Not_Sun_Exposed_Suprapubic)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'SNSES' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.574 AUROC (SSELL (Skin_Sun_Exposed_Lower_leg)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'SSELL' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.527 AUROC (Thyroid) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'Thyroid' |
| Configuration: Caduceus-Ph (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.594 AUROC (WB (Whole_Blood)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-Ph on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-Ph', column 'WB' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.519 AUROC (AS (Adipose_Subcutaneous)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'AS' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.536 AUROC (AT (Artery_Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'AT' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.537 AUROC (average over eQTLP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'Avg' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.549 AUROC (CCF (Cells_Cultured_fibroblasts)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'CCF' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.523 AUROC (MS (Muscle Skeletal)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'MS' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.552 AUROC (NT (Nerve Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'NT' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.529 AUROC (SNSES (Skin_Not_Sun_Exposed_Suprapubic)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'SNSES' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.541 AUROC (SSELL (Skin_Sun_Exposed_Lower_leg)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'SSELL' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.547 AUROC (Thyroid) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'Thyroid' |
| Configuration: Caduceus-PS (DNALONGBENCH) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.542 AUROC (WB (Whole_Blood)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on DNALONGBENCH eQTLP lit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'Caduceus-PS', column 'WB' |
| Configuration: CNN (DNALONGBENCH, eQTLP) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.551 AUROC (AS (Adipose_Subcutaneous)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'CNN', column 'AS' |
| Configuration: CNN (DNALONGBENCH, eQTLP) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.576 AUROC (AT (Artery_Tibial)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'CNN', column 'AT' |
| Configuration: CNN (DNALONGBENCH, eQTLP) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.528 AUROC (average over eQTLP conditions as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'CNN', column 'Avg' |
| Configuration: CNN (DNALONGBENCH, eQTLP) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.547 AUROC (CCF (Cells_Cultured_fibroblasts)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'CNN', column 'CCF' |
| Configuration: CNN (DNALONGBENCH, eQTLP) | Protocol: DNALONGBENCH Expression quantitative trait loci prediction (Table 7) Dataset: DNALONGBENCH Expression quantitative trait loci prediction test set | 0.502 AUROC (MS (Muscle Skeletal)) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-dnalongbench-protocol-eqtlp Aggregation: Not reported DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks · Table 7, row 'CNN', column 'MS' |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Methods 'Benchmark dataset' for Expression quantitative trait loci prediction; Table 2 Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Expression quantitative trait loci prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Held-out test set as defined by DNALONGBENCH Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Expression quantitative trait loci prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description Held-out test data for the DNALONGBENCH Expression quantitative trait loci prediction task. Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Expression quantitative trait loci prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name DNALONGBENCH Expression quantitative trait loci prediction test set Context-only references | DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks Methods 'Benchmark dataset' for Expression quantitative trait loci prediction; Table 2 Version: Nature Communications 16, published 2025-11-18; PMC12627797 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-23-5347695500ed · Record review: source checked
Stable ID: lit-genomics-20261011-dnalongbench-data-eqtlp