HyenaDNA (C.Elegans 4mC classification)
HyenaDNA (C.Elegans 4mC classification): Frozen last-layer mean token embeddings; Supervised random forest fitted separately for this task.
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Evaluations and results
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: HyenaDNA (C.Elegans 4mC classification) | Protocol: Feng C.Elegans 4mC sequence classification Dataset: Feng C.Elegans 4mC dataset | 0.596 AUROC (task: c.elegans 4mc) unitless · higher Uncertainty: Not reported by the source: Table 3 prints point AUCs only. Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA C.Elegans 4mC evaluation Table 3, frozen embeddings + task-specific random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 3, row 'C.Elegans 4mC', column 'HyenaDNA'. |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
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Stable ID: feng-dna-fm-20261014-config-t3-c-elegans-4mc-hyenadna
- areas
- dna-genomes
- contexts
- research
- method types
- foundation_model
- foundation model eligible
- true
- head
- Supervised random forest fitted separately for this task
- reported name
- HyenaDNA
- representation
- Frozen last-layer mean token embeddings
- task
- C.Elegans 4mC classification
- checkpoint
- Hyena-160K (Methods, 'Model configuration selection' paragraph)
- missing metadata
- head revision: reason: unextracted; version: reason: unreported; note: Immutable checkpoint revision is not stated in the article.
- provenance note
- HyenaDNA (C.Elegans 4mC classification); Feng et al. 2025 source-reported, task-scoped configuration.