DEEPSEA
Specialist published model that the BEND authors compare against on this task, not a language model embedding.
2 evaluations · 2 results1 configuration with further results
Overview
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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
2 evaluations · 2 results. Different protocols are not a single leaderboard.
Sorted by AUROC (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | AUROC |
|---|---|---|
| DEEPSEAEvaluation | BEND VARIANT-EXPRESSION: Noncoding variant effects on expression, DeepSEA expression variants (BEND split) | 0.7 (best in column) |
| DEEPSEAEvaluation | BEND VARIANT-DISEASE: Noncoding variant effects on disease, ClinVar disease variants (BEND split) | 0.56 |
All 2 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DEEPSEA | Task: BEND VARIANT-DISEASE: Noncoding variant effects on disease Dataset subset: ClinVar disease variants (BEND split) | 0.56 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDEEPSEA on BEND VARIANT-DISEASE: Noncoding variant effects on disease A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Noncoding variant effects on disease) |
| Configuration: DEEPSEA | Task: BEND VARIANT-EXPRESSION: Noncoding variant effects on expression Dataset subset: DeepSEA expression variants (BEND split) | 0.7 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDEEPSEA on BEND VARIANT-EXPRESSION: Noncoding variant effects on expression A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Noncoding variant effects on expression) |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
Further results on linked records
One linked record has results that are not included above, because no reviewed claim yet ties the link to this configuration. Each record keeps its own settings and evaluations, and its scores are on its own page.
- DeepSEA (1% eval (evaluated with 1% of the training set), GUANinE v1.1) Configuration · configuration of this configuration · 6 evaluations · 6 results
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How it works, versions and access
Additional methodological details, versions and access terms have not yet been extracted into a structured profile for this configuration. Consult the linked sources and evaluation records below.
Evidence
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Evidence table
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-method-deepsea
- areas
- dna-genomes
- source locator
- Table 3, row(Expert method), column(Noncoding variant effects on expression)
- missing metadata
- checkpoint revision: reason: unreported; parameters: reason: unextracted