DEEPSEA
Specialist published model that the BEND authors compare against on this task, not a language model embedding.
Overview
Specialist published model that the BEND authors compare against on this task, not a language model embedding.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
2 evaluations · 2 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DEEPSEA | Task: BEND VARIANT-DISEASE: Noncoding variant effects on disease Dataset subset: ClinVar disease variants (BEND split) | 0.56 auroc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDEEPSEA on BEND VARIANT-DISEASE: Noncoding variant effects on disease A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Noncoding variant effects on disease) |
| Configuration: DEEPSEA | Task: BEND VARIANT-EXPRESSION: Noncoding variant effects on expression Dataset subset: DeepSEA expression variants (BEND split) | 0.7 auroc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDEEPSEA on BEND VARIANT-EXPRESSION: Noncoding variant effects on expression A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Aggregation: Not reported BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Noncoding variant effects on expression) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
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Evidence
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Evidence table
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Sources and history
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Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-method-deepsea
- areas
- dna-genomes
- source locator
- Table 3, row(Expert method), column(Noncoding variant effects on expression)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted