Configuration

Caduceus-Ph (Acceptor classification)

Caduceus-Ph (Acceptor classification); Feng et al. 2025 source-reported, task-scoped configuration.

Overview

Caduceus-Ph (Acceptor classification); Feng et al. 2025 source-reported, task-scoped configuration.

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Evaluations and results

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Caduceus-Ph (Acceptor classification)	Protocol: Feng Acceptor sequence classification Dataset: Feng Acceptor dataset	0.845 Acceptor AUC AUC · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Caduceus-Ph Acceptor evaluation Table 1, frozen embeddings + task-specific random forest classifier Aggregation: Not reported Benchmarking DNA foundation models for genomic and genetic tasks · Table 1, Acceptor row, Caduceus-Ph column (deterministic XML extraction; see data/omics/amp-coverage-20261007/feng/selected-rows.json)

Source checking is not independent reproduction. Release 2026-10-07-1448159e6a81.

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Evidence

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Claims, original sources and review scope · Release 2026-10-07-1448159e6a81
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Sources and history

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Release 2026-10-07-1448159e6a81 · Record review: source checked

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Benchmarking DNA foundation models for genomic and genetic tasks · Original source · PMC12663285.1

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Technical metadata and extraction receipts

Stable ID: amp-feng-20261007-config-splice-acceptor-caduceus-ph

method types: foundation_model
actual input bp: Not reported
foundation model eligible: true
head: Supervised random forest fitted separately for this task
head revision: Not reported
missing metadata: version: Printed model name and input representation only; immutable checkpoint/head revision is unreported in the inspected primary text.
output aggregation bp: Not reported
reported name: Caduceus-Ph
representation: Frozen last-layer mean token embeddings
task: Acceptor classification
version: Not reported

Related records

configuration: Caduceus-Ph Acceptor evaluation

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