PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
combination prediction on Norman19, RMSE of the mean. Scored with RMSE of the mean on Norman19. Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds.
Overview
combination prediction on Norman19, RMSE of the mean. Scored with RMSE of the mean on Norman19. Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
rmse_mean (error) · Lower values are better.
PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean · Norman19 (PerturBench split)
Evidence origin: Author-reported evaluation.
PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis · Table 3, column(RMSE, mean)- RMSE and both rank metrics are better when lower. The rank metrics measure how often another perturbation's prediction is closer than the right one's.
- The two experiments use different datasets and splits, so their figures are not comparable to each other.
Comparison details and limitations
Every method PerturBench reports on combination prediction on Norman19, RMSE of the mean, scored with RMSE of the mean on Norman19.
- Author-reported numbers, source checked but not independently reproduced.
Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Showing 9 of 9 matching rows.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- Biolord* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- CPA* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- CPA* (noAdv) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- CPA* (scGPT) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- Decoder on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- LA on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- LA (scGPT) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- Linear on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- SAMS-VAE* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Strengths, limitations and unresolved questions
Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-perturbench Individual claims | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, column(RMSE, mean) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: perturbench-association-cb-rmse Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: perturbench-task-cb-rmse
- areas
- cells-tissues
- tasks
- combination prediction on Norman19, RMSE of the mean
- metric
- RMSE of the mean
- metric direction
- lower
- dataset
- Norman19
- protocol
- Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds.
- source locator
- Table 3, column(RMSE, mean)
- comparison panels
- id: perturbench-panel-cb-rmse; title: PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean; protocol id: perturbench-task-cb-rmse; dataset id: perturbench-dataset-norman19; metric: rmse_mean; unit: error; direction: lower; result ids: perturbench-result-cpa-cb-rmse-rmse-mean; perturbench-result-cpa-noadv-cb-rmse-rmse-mean; perturbench-result-cpa-scgpt-cb-rmse-rmse-mean; perturbench-result-sams-vae-cb-rmse-rmse-mean; perturbench-result-biolord-cb-rmse-rmse-mean; perturbench-result-la-cb-rmse-rmse-mean; perturbench-result-la-scgpt-cb-rmse-rmse-mean; perturbench-result-decoder-cb-rmse-rmse-mean; perturbench-result-linear-cb-rmse-rmse-mean; source ids: evidence-expansion-perturbench-5c480456; source locator: Table 3, column(RMSE, mean); context: Every method PerturBench reports on combination prediction on Norman19, RMSE of the mean, scored with RMSE of the mean on Norman19.; caveats: Author-reported numbers, source checked but not independently reproduced.; RMSE and both rank metrics are better when lower. The rank metrics measure how often another perturbation's prediction is closer than the right one's.; The two experiments use different datasets and splits, so their figures are not comparable to each other.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: PerturBench
- subject: PerturBench CB-RMSE: part of discovery-benchmark-perturbench
- benchmark: Biolord* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: CPA* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: CPA* (noAdv) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: CPA* (scGPT) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: Decoder on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: LA on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: LA (scGPT) on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: Linear on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean
- benchmark: SAMS-VAE* on PerturBench CB-RMSE: combination prediction on Norman19, RMSE of the mean