GUE EPIGENETIC-MARKS-PREDICTION-H3K9AC: Epigenetic marks prediction, dataset H3K9ac

Overview

Epigenetic marks prediction, dataset H3K9ac. Scored with MCC on GUE Epigenetic marks prediction, H3K9ac. Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.

Evaluation scope and datasetMetric and reported setup

GUE EPIGENETIC-MARKS-PREDICTION-H3K9AC: Epigenetic marks prediction, dataset H3K9ac

mcc (percent) · Higher values are better.

GUE EPIGENETIC-MARKS-PREDICTION-H3K9AC: Epigenetic marks prediction, dataset H3K9ac · GUE Epigenetic marks prediction, H3K9ac (GUE split)

Evidence origin: Author-reported evaluation.

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Table 12, row(Epigenetic marks prediction)

Scores are MCC, except Covid variant classification which is F1, both on a 0 to 100 scale.
The diamond entry is DNABERT-2 with further pre-training on the GUE training sets, so it is not directly comparable to the others.

Comparison details and limitations

Every method GUE reports on Epigenetic marks prediction, dataset H3K9ac, scored with MCC on GUE Epigenetic marks prediction, H3K9ac.

Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Find a tested model or method

Showing 10 of 10 matching rows.

Zoom to observed range

Tested configuration

-113.52842.657.1

Reported score

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

GUE

These source-backed links do not make different protocols or scores interchangeable.

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
Relationship: part of discovery-benchmark-gue Individual claims	DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes Original source ↗ Table 12, row(Epigenetic marks prediction) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 Retrieved: 2026-09-17T08:06:28.183387+00:00	source checked automated source review · 2026-09-18 Audit details Primary-source transcription with no human sign-off and no independent reproduction. Field: `links:part_of:discovery-benchmark-gue` Claim: gue-association-epigenetic-marks-prediction-h3k9ac Source artifact SHA-256: `49300acee3e4afd44bebc3de9893c3bc310d331bd4805374e0952fdfbf366f06` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genomes · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

Download this release

Technical metadata and extraction receipts

Stable ID: gue-task-epigenetic-marks-prediction-h3k9ac

areas: dna-genomes
tasks: Epigenetic marks prediction, dataset H3K9ac
metric: MCC
metric direction: higher
dataset: GUE Epigenetic marks prediction, H3K9ac
protocol: Fine-tuned on the GUE training split, scored on its test split. Split sizes are in Table 12.
source locator: Table 12, row(Epigenetic marks prediction)
comparison panels: id: gue-panel-epigenetic-marks-prediction-h3k9ac; title: GUE EPIGENETIC-MARKS-PREDICTION-H3K9AC: Epigenetic marks prediction, dataset H3K9ac; protocol id: gue-task-epigenetic-marks-prediction-h3k9ac; dataset id: gue-dataset-gue-epigenetic-marks-prediction-h3k9ac; metric: mcc; unit: percent; direction: higher; result ids: gue-result-dnabert-3-mer-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-dnabert-4-mer-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-dnabert-5-mer-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-dnabert-6-mer-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-nt-500m-human-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-nt-500m-1000g-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-nt-2500m-1000g-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-nt-2500m-multi-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-dnabert-2-epigenetic-marks-prediction-h3k9ac-mcc; gue-result-dnabert-2-further-pre-trained-on-gue-epigenetic-marks-prediction-h3k9ac-mcc; source ids: evidence-expansion-gue-49300ace; source locator: Table 12, row(Epigenetic marks prediction); context: Every method GUE reports on Epigenetic marks prediction, dataset H3K9ac, scored with MCC on GUE Epigenetic marks prediction, H3K9ac.; caveats: Author-reported numbers, source checked but not independently reproduced.; Scores are MCC, except Covid variant classification which is F1, both on a 0 to 100 scale.; The diamond entry is DNABERT-2 with further pre-training on the GUE training sets, so it is not directly comparable to the others.; review: method: automated_source_review; date: 2026-09-18

Related records