Task

Translation / RNA stability

Translation and RNA-stability tasks test different measurable properties of transcripts and should be reported as separate endpoints.

Sources

morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

No reviewed evaluations are linked here in this release. See the sources and separately identified configurations below.

0 evaluations · 0 results

Overview

Datasets

No single dataset is fixed by this guide. Select a linked protocol and its versioned data release.

inapplicable

Metrics

Endpoint-specific regression or classification as defined by the selected dataset; retain measurement units and any target transformation.

Allowed inputs

Transcript or UTR sequences with task-specific experimental measurements and declared transcript-region boundaries.

Sources

morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Evaluation procedure diagram

How it worksConceptual evaluation workflow

Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.

Sources

morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Source reviewed · Automated source review, 2026-09-16. All specifications and missing details

Results

All evaluations

0 evaluations · 0 results. Different protocols are not a single leaderboard.

Applied filters: All linked evaluations

No evaluations linked in this release.

Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.

Methods and evaluation design

Procedure, tasks and evaluated configurations

How it works

Choosing an evaluation

Select the endpoint and biological context before comparing methods. mRNABench distinguishes mean ribosome load, translation efficiency and RNA half-life datasets. Reporter constructs, native transcripts and different organisms are not interchangeable datasets. Record which transcript regions and supervision are available to the model.

Sources

morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Task scope

This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.

Sources

morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.

Strengths, limitations and unresolved questions

Strengths and limitations

Strengths supported by sources

Separate molecular endpoints allow evaluation of specific transcript properties instead of an undefined general RNA score.
Sources
morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Limitations and conditions

Ribosome loading, translation efficiency and stability are related but distinct measurements. Good performance on one is not evidence for the others.
Sources
morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Profile review details

Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.

Stable record: catalog-task-utr-translation

Specifications

Inputs, training, access and other details

Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.

Data, procedure and scoring
Property	Description and evidence
Entity type	Task guide; concrete protocol identities remain separate. Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Datasets	No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicable Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Organisms	No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicable Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Assays	No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicable Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Splits	No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicable Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Allowed inputs	Transcript or UTR sequences with task-specific experimental measurements and declared transcript-region boundaries. Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Adaptation	No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicable Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Metrics	Endpoint-specific regression or classification as defined by the selected dataset; retain measurement units and any target transformation. Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models
Baselines	mRNABench supplies conventional baselines alongside RNA and DNA representation models. Compare only within the same endpoint, split and input scope. Sources morrislab/mRNABench official source · README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Papers and result coverage

Last literature check: 2026-09-17. Primary-source discovery and table/protocol screening; source checked is not independently reproduced. Raw acquisitions not automatically numerical publication approval.

Paper or primary resource	Version	Reference
mRNABench: A curated benchmark for mature mRNA property and function prediction	PMC primary-source artifact, version pinned by SHA256	Read source DOI: 10.1101/2025.07.05.662870

Historical gaps recorded on 2026-09-17

Translation and stability encompass separate species, cell contexts, transcript regions and assays. Fresh primary XML pinned; concrete mRNABench protocols should be linked instead of attaching all suite results to broad task.

Search and extraction details

broad task requires concrete protocol links

Searches

Translation / RNA stability primary paper benchmark results

Evidence locations

Task definitions and performance results; training/validation/test construction

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

17 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	source checked automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.diagram.caption` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Diagram steps Choose molecular endpoint and dataset Fix sequence regions and held-out split Fit or apply the declared predictor Score the matching measurement Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	source checked automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.diagram.steps` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Diagram title Conceptual evaluation workflow Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	source checked automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.diagram.title` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Entity type Task guide; concrete protocol identities remain separate. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	source checked automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.0.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	inapplicable automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.1.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Organisms No shared organism population is defined at this guide level. Record it for each selected dataset. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	inapplicable automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.2.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Assays No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	inapplicable automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.3.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Splits No executable split is attached to this task identity. Use the selected protocol’s split manifest. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	inapplicable automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.4.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Allowed inputs Transcript or UTR sequences with task-specific experimental measurements and declared transcript-region boundaries. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	source checked automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.5.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record
Adaptation No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. Individual claims	morrislab/mRNABench official source Original source ↗ README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models Version: 74f96b8e6ae9f41cc3cccff089d826a62d5604b8 Retrieved: 2026-09-16T10:30:21.823561+00:00	inapplicable automated source review · 2026-09-16 Audit details Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: `attributes.profile.facts.6.value` Source artifact SHA-256: `f0c67304e20ced42938829dfee39480cef51ee3a4357ee8b53eafc89c305fa60` Hash scope: Hash scope not separately documented; inspect source record

All evidence (CSV)All evidence (JSONL)How to read the evidence

Sources and history

View linked audit checks and correction history

Release 2026-09-29-06401fd5b220 · Record review: discovered

4 source records and release history

mRNA-FM official resource · Original source · Not reported
MIMIC official resource · Original source · Not reported
mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · PMC primary-source artifact, version pinned by SHA256
morrislab/mRNABench official source · Original source · 74f96b8e6ae9f41cc3cccff089d826a62d5604b8

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Technical metadata and extraction receipts

Stable ID: catalog-task-utr-translation

areas: rna-transcriptomes
entity level: task
version: Not reported
task: Translation / RNA stability
scope note: Predict measured translation or stability effects; choose UTR or coding-sequence assays to match each model’s input modality.
benchmark research: review date: 2026-09-17; status: broad_task_requires_concrete_protocol_links; primary sources: evidence-expansion-p2-mrnabench-2025-79f6264ee883; inspected locators: Task definitions and performance results; training/validation/test construction; searched queries: Translation / RNA stability primary paper benchmark results; gaps: Translation and stability encompass separate species, cell contexts, transcript regions and assays. Fresh primary XML pinned; concrete mRNABench protocols should be linked instead of attaching all suite results to broad task.; claim scope: Primary-source discovery and table/protocol screening; source checked is not independently reproduced. Raw acquisitions not automatically numerical publication approval.
historical missing metadata: protocol version: not_yet_extracted
metadata review scope: historical_missing_metadata preserves the original discovery state. Current descriptive evidence and missingness are recorded in profile.facts; numerical-result review is separate.
legacy kinds: benchmark
entity classification: review date: 2026-09-17; rationale: This record identifies the biological prediction question or a suite-specific task, rather than a uniquely fixed evaluated procedure. Preserve its task identity and leave split, model adaptation and scoring details on linked protocols/evaluations.; source ids: src-discovery-morrislab-mrnabench; source locator: README: Dataset Catalog / Translation Regulation and RNA Stability; Model Catalog / Baseline Models; ambiguities: None recorded

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