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Task

BEACON MRL: Mean ribosome loading prediction

Mean ribosome loading prediction. Reg at sequence level, scored with R2. Dataset Optimus; train/validation/test 76,319/7,600/7,600.

17 evaluations · 17 results

Overview

Mean ribosome loading prediction. Reg at sequence level, scored with R2. Dataset Optimus; train/validation/test 76,319/7,600/7,600.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.

BEACON MRL: Mean ribosome loading prediction

r2 (percent) · Higher values are better.

BEACON MRL: Mean ribosome loading prediction · Optimus (BEACON split)

Evidence origin: Author-reported evaluation.

BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,column(MRL)
  • The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.
  • Metrics differ between tasks, so these figures cannot be averaged into one RNA score.
Comparison details and limitations

Every method in BEACON Table 3 on Mean ribosome loading prediction, scored with R2 on Optimus with the split 76,319/7,600/7,600.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 12 of 17 matching rows.

Tested configuration
0255075100
Reported score
  1. Splice-MS51084.98(0.28)
  2. LSTM83.94(0.08)
  3. UTRBERT-3mer83.89(0.13)
  4. UTRBERT-6mer83.60(0.39)
  5. Splice-H51083.49(0.47)
  6. RNA-MSM83.48(0.18)
  7. UTRBERT-4mer82.90(0.75)
  8. UTR-LM-TE&EL82.50(1.45)
  9. RNA-FM79.47(0.47)
  10. UTR-LM-MRL77.78(6.03)
  11. UTRBERT-5mer75.64(4.70)
  12. ResNet74.34(0.22)

Methods and evaluation design

Procedure, tasks and evaluated configurations

Evaluation design

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Benchmarks

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Recorded evaluations

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Run instructions

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-beacon
Individual claims		BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2)

Original source ↗

Table1,p.6,row(MRL)

Version: v2, 12 December 2024
Retrieved: 2026-09-18

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-beacon

Claim: beacon-association-mrl

Source artifact SHA-256: 1370d75fe591bb8f994bc67f100a1a3fd557a62b9edb962b21f2fb038e9dea16

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: beacon-task-mrl

areas
rna-transcriptomes
tasks
Mean ribosome loading prediction
metric
R2
metric direction
higher
task type
Reg
rna level
Sequence
dataset
Optimus
splits
76,319/7,600/7,600
source locator
Table1,p.6,row(MRL)
comparison panels
id: beacon-panel-mrl; title: BEACON MRL: Mean ribosome loading prediction; protocol id: beacon-task-mrl; dataset id: beacon-dataset-optimus; metric: r2; unit: percent; direction: higher; result ids: beacon-result-cnn-mrl-r2; beacon-result-resnet-mrl-r2; beacon-result-lstm-mrl-r2; beacon-result-rna-fm-mrl-r2; beacon-result-rnabert-mrl-r2; beacon-result-rna-msm-mrl-r2; beacon-result-splice-h510-mrl-r2; beacon-result-splice-ms510-mrl-r2; beacon-result-splice-ms1024-mrl-r2; beacon-result-utr-lm-mrl-mrl-r2; beacon-result-utr-lm-te-and-el-mrl-r2; beacon-result-utrbert-3mer-mrl-r2; beacon-result-utrbert-4mer-mrl-r2; beacon-result-utrbert-5mer-mrl-r2; beacon-result-utrbert-6mer-mrl-r2; beacon-result-beacon-b-mrl-r2; beacon-result-beacon-b512-mrl-r2; source ids: source-beacon-arxiv-2406-10391; source locator: Table3,p.8,column(MRL); context: Every method in BEACON Table 3 on Mean ribosome loading prediction, scored with R2 on Optimus with the split 76,319/7,600/7,600.; caveats: Author-reported numbers, source checked but not independently reproduced.; The Literature SOTA row is excluded: those numbers come from other papers under their own protocols.; Metrics differ between tasks, so these figures cannot be averaged into one RNA score.; review: method: automated_source_review; date: 2026-09-18
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