ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman
RNA structure ranking, global Spearman. Scored with Spearman r on ATOM3D RSR. Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed.
Overview
RNA structure ranking, global Spearman. Scored with Spearman r on ATOM3D RSR. Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman
spearman_r (correlation) · Higher values are better.
ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman · ATOM3D RSR (ATOM3D split)
Evidence origin: Author-reported evaluation.
ATOM3D: Tasks On Molecules in Three Dimensions · Table 6, row(glob. RS)- The paper marks some runs with an asterisk to say their training data differed, though the splitting criteria were the same.
Comparison details and limitations
Every method ATOM3D reports on RNA structure ranking, global Spearman, scored with Spearman r on ATOM3D RSR.
- Author-reported numbers, source checked but not independently reproduced.
- MAE and RMSE are errors, better when lower. The other metrics are better when higher.
- Comparison methods are named by the citation the table prints; the paper's text says which method each is.
Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Showing 3 of 3 matching rows.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-atom3d Individual claims | ATOM3D: Tasks On Molecules in Three Dimensions Table 6, row(glob. RS) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: atom3d-association-rsr-global-rs Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- ATOM3D: Tasks On Molecules in Three Dimensions · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: atom3d-task-rsr-global-rs
- areas
- molecular-interactions
- tasks
- RNA structure ranking, global Spearman
- metric
- Spearman r
- metric direction
- higher
- dataset
- ATOM3D RSR
- protocol
- Trained and scored under the ATOM3D split for this task. Asterisks in the paper mark a run whose training data differed.
- source locator
- Table 6, row(glob. RS)
- comparison panels
- id: atom3d-panel-rsr-global-rs; title: ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman; protocol id: atom3d-task-rsr-global-rs; dataset id: atom3d-dataset-atom3d-rsr; metric: spearman_r; unit: correlation; direction: higher; result ids: atom3d-result-3dcnn-rsr-global-rs-spearman-r; atom3d-result-gnn-rsr-global-rs-spearman-r; atom3d-result-watkins-et-al-2020-rsr-global-rs-spearman-r; source ids: evidence-expansion-atom3d-92656c20; source locator: Table 6, row(glob. RS); context: Every method ATOM3D reports on RNA structure ranking, global Spearman, scored with Spearman r on ATOM3D RSR.; caveats: Author-reported numbers, source checked but not independently reproduced.; MAE and RMSE are errors, better when lower. The other metrics are better when higher.; Comparison methods are named by the citation the table prints; the paper's text says which method each is.; The paper marks some runs with an asterisk to say their training data differed, though the splitting criteria were the same.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: ATOM3D
- subject: ATOM3D RSR-GLOBAL-RS: part of discovery-benchmark-atom3d
- benchmark: 3DCNN on ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman
- benchmark: GNN on ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman
- benchmark: Rosetta scoring function (RSR configuration unresolved) on ATOM3D RSR-GLOBAL-RS: RNA structure ranking, global Spearman