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A comparison of automatic cell identification methods for single-cell RNA sequencing data

Primary research source retrieved and inspected for the 2026-10-06 cell-type-annotation-transfer additive intake.

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21 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-06-161b59a1d02c
Property and statement	Original source and location	Review and provenance
attributes.artifact_url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6734286/fullTextXML Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.license CC BY 4.0, quoted verbatim: "This article is distributed under the terms of the Creative Commons Attribution 4.0 International License" (c) The Author(s) 2019. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.license` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.local_cache_path data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz (committed, gzip-compressed, tracked in version control); also present uncompressed, untracked, in workbench/source-review-20261006/PMC6734286.xml for interactive inspection. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.local_cache_path` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.retrieval_method HTTPS download; article XML via Europe PMC primary full-text mirror. Fetched directly in this review pass at 2026-10-06T23:28:54Z (UTC, actual fetch timestamp, not the earlier bounded-window estimate); SHA-256 unchanged from the prior fetch, confirming no version drift. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieval_method` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.retrieved_at 2026-10-06T23:28:54Z Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review_artifact data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.review_artifact` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review.actor Claude Sonnet cell-type-annotation-transfer evidence-research worker Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.actor` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review.method automated_source_review Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review.note Source-backed primary-text transcription of Abdelaal et al. 2019 (Genome Biology). Re-fetched directly from Europe PMC at 2026-10-06T23:28:54Z (this review pass; not the earlier bounded-window estimate), byte-identical to the already-cached copy (SHA-256 unchanged), and archived as a committed artifact at data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz. No new model execution, independent experimental replication, or qualified human scientific review. Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.note` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.review.reviewed_at 2026-10-06T23:28:54Z Source metadata	A comparison of automatic cell identification methods for single-cell RNA sequencing data Original source ↗ No field-specific location recorded Version: 10.1186/s13059-019-1795-z; published article XML Retrieved: 2026-10-06T23:28:54Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.reviewed_at` Source artifact SHA-256: `Not recorded` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-10-06-161b59a1d02c · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: ucc-research-source-abdelaal-2019-paper

url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6734286/fullTextXML
version: 10.1186/s13059-019-1795-z; published article XML
retrieved at: 2026-10-06T23:28:54Z
sha256: 6df0937c5a2d8ba06465ba356c2321fb9f52d9ecf23456876acd82f828b41d4c
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC6734286/fullTextXML
source locator: Results, "Benchmarking automatic cell identification methods (intra-dataset evaluation)"; Methods, "Intra-dataset classification"; Table 1; Table 2; Fig. 1
license: CC BY 4.0, quoted verbatim: "This article is distributed under the terms of the Creative Commons Attribution 4.0 International License" (c) The Author(s) 2019.
review: method: automated_source_review; actor: Claude Sonnet cell-type-annotation-transfer evidence-research worker; reviewed at: 2026-10-06T23:28:54Z; note: Source-backed primary-text transcription of Abdelaal et al. 2019 (Genome Biology). Re-fetched directly from Europe PMC at 2026-10-06T23:28:54Z (this review pass; not the earlier bounded-window estimate), byte-identical to the already-cached copy (SHA-256 unchanged), and archived as a committed artifact at data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz. No new model execution, independent experimental replication, or qualified human scientific review.
retrieval method: HTTPS download; article XML via Europe PMC primary full-text mirror. Fetched directly in this review pass at 2026-10-06T23:28:54Z (UTC, actual fetch timestamp, not the earlier bounded-window estimate); SHA-256 unchanged from the prior fetch, confirming no version drift.
local cache path: data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz (committed, gzip-compressed, tracked in version control); also present uncompressed, untracked, in workbench/source-review-20261006/PMC6734286.xml for interactive inspection.
review artifact: data/omics/use-case-coverage-20261006/research/artifacts/abdelaal-2019-pmc6734286-fulltext.xml.gz

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