Source

Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026)

marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) · Project source

Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

4 configurations
1 evidence claim

Claims

Statements this source supports, each with where in the source it was checked.

Alavi 2026 AlphaGenome splicing discrepancy: corrected values added from the revised preprint: Discrepancy review confirmed-error (rna-splicing-20261101-alavi2026-v2-source-article: Tables III and IV, AlphaGenome rows; Methods D. rna-splicing-20261101-alavi2026-v2-source-scoring-scripts: commit 2a3875de6635d3c9b51c71c8018d23df0df98d37, models/2_alphagenome. Upstream issue #2 state and closing date from the GitHub API.)

Models, benchmarks and other records

Configurations (4)

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516 Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Artifact url https://raw.githubusercontent.com/marcel-2c8/splicing-model-eval-2026/2a3875de6635d3c9b51c71c8018d23df0df98d37/models/2_alphagenome/2c8_alphagenome_merged_splicing_scorer.py Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Hash scope SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Licence CC BY-NC-ND 4.0 Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Limitations 2 values All three scripts pass the 1-based VCF position to genome.Variant (splicescorer line 156, junctionscorer line 182, merged scorer line 225). The fixes are commits da0cf43e and 4a5c9163 (2026-10-23); the merged scorer was added in 102a107f (2026-10-30). Upstream issue #2 was closed on 2026-10-31. The scripts write scores only; the classification thresholds are applied downstream and are taken from the preprint's Methods D. Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.limitations` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Media type text/x-python Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Publication status official_project_source Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Retrieved at 2026-11-01T14:48:00Z Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Url https://github.com/marcel-2c8/splicing-model-eval-2026/tree/2a3875de6635d3c9b51c71c8018d23df0df98d37/models/2_alphagenome Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact
Version marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Source metadata	Alavi 2026 AlphaGenome scoring scripts at commit 2a3875de (marcel-2c8/splicing-model-eval-2026) Original source ↗ No field-specific location recorded Version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31) Retrieved: 2026-11-01T14:48:00Z	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516` Hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec. Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

The author's AlphaGenome scoring scripts after the 1-base coordinate fix, pinned to a commit; the repository was renamed from Probing-genomic-foundation-models-2026.

Release history

No supporting source is linked yet.

Read original source

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: rna-splicing-20261101-alavi2026-v2-source-scoring-scripts

areas: dna-genomes
contexts: clinical_research
url: https://github.com/marcel-2c8/splicing-model-eval-2026/tree/2a3875de6635d3c9b51c71c8018d23df0df98d37/models/2_alphagenome
artifact url: https://raw.githubusercontent.com/marcel-2c8/splicing-model-eval-2026/2a3875de6635d3c9b51c71c8018d23df0df98d37/models/2_alphagenome/2c8_alphagenome_merged_splicing_scorer.py
version: marcel-2c8/splicing-model-eval-2026 commit 2a3875de6635d3c9b51c71c8018d23df0df98d37 (2026-10-31)
retrieved at: 2026-11-01T14:48:00Z
artifact sha256: 84b4887ca3b44a6600d6a02046ab6de9d2f78c49592f82b16221d32fa5160516
publication status: official_project_source
licence: CC BY-NC-ND 4.0
media type: text/x-python
hash scope: SHA-256 of 2c8_alphagenome_merged_splicing_scorer.py at the commit. The other two scripts at the same commit: 2c8_alphagenome_splicescorer.py 0c425043d31e02b1ca6fe0ce1120051352a0b2eae2571e70ce4f05f14114c151, 2c8_alphagenome_junctionscorer.py 9f260b27b06670505a903e8695ce020ac7432acd640a7041823d47c762bfbcec.
limitations: All three scripts pass the 1-based VCF position to genome.Variant (splicescorer line 156, junctionscorer line 182, merged scorer line 225). The fixes are commits da0cf43e and 4a5c9163 (2026-10-23); the merged scorer was added in 102a107f (2026-10-30). Upstream issue #2 was closed on 2026-10-31.; The scripts write scores only; the classification thresholds are applied downstream and are taken from the preprint's Methods D.

Related records

Suggest a correction