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Proteome-wide model for human disease genetics (popEVE)

Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 · Peer-reviewed

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1 method
1 evidence claim

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popEVE: description: Description Deep generative model that combines evolutionary and human population data to score variant deleteriousness on a scale calibrated across the proteome. (qa-descriptions-20261011-e-source-popeve: Abstract)

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popEVE

Evidence

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25 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12695638/fullTextXML Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Hash scope SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Licence CC-BY-NC-ND-4.0 Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Media type application/xml Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Publication status peer_reviewed Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Retrieved at 2026-10-11T01:38:40Z Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review: date 2026-10-11 Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review method 2 values automated-source-review ai-assisted-source-review Source metadata	Proteome-wide model for human disease genetics (popEVE) Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025 Retrieved: 2026-10-11T01:38:40Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact

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Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Source text retrieved and hashed for the issue #88 category-only description fix.

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Technical metadata and extraction receipts

Stable ID: qa-descriptions-20261011-e-source-popeve

url: https://doi.org/10.1038/s41588-025-02400-1
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12695638/fullTextXML
version: Europe PMC full-text XML for PMC12695638, Nature Genetics 2025
retrieved at: 2026-10-11T01:38:40Z
artifact sha256: 5995c0b15ea643adfbc7123beb9a9017aca518e4052c92088a5b5ae26e7781be
publication status: peer_reviewed
media type: application/xml
source locator: Abstract
hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence.
licence: CC-BY-NC-ND-4.0
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved with two corrections, both applied: the MutFormer source licence is CC BY 4.0 per the arXiv abstract page, and the MetaRNN source locator now names the Background passage. Checked the 27 Chen 2020 descriptions row by row against Table 1 (PMC7033911) and spot-checked AlphaMissense, MisFit, popEVE, VARITY, MetaRNN, MutFormer and gMVP against their abstracts; accurate. Licences on the other new sources match Europe PMC.; receipt: data/omics/qa-descriptions-20261011-e/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12695638/fullTextXML

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