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Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP)

Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 · Peer-reviewed

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1 evidence claim

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gMVP: description: Description Graph attention neural network whose nodes carry amino-acid features and whose edges are weighted by co-evolution strength, pooling information from the local protein context and from correlated distal positions. (qa-descriptions-20261011-e-source-gmvp: abstractText)

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gMVP

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26 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525 Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1038/s42256-022-00561-w%22&format=json&resultType=core Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Hash scope SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Media type application/json Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Missing metadata: licence: note The retrieved record gives no licence Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.missing_metadata.licence.note` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Missing metadata: licence: reason unreported Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.missing_metadata.licence.reason` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Publication status peer_reviewed Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Retrieved at 2026-10-11T01:38:38Z Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Review: date 2026-10-11 Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata	Abstract: Predicting functional effect of missense variants using graph attention neural networks (gMVP) Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022 Retrieved: 2026-10-11T01:38:38Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Source text retrieved and hashed for the issue #88 category-only description fix.

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Technical metadata and extraction receipts

Stable ID: qa-descriptions-20261011-e-source-gmvp

url: https://doi.org/10.1038/s42256-022-00561-w
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1038/s42256-022-00561-w%22&format=json&resultType=core
version: Europe PMC core record MED/37484202 (title and abstract), Nature Machine Intelligence 2022
retrieved at: 2026-10-11T01:38:38Z
artifact sha256: 27c9af15fc3ab76243b896e115b66f0c2e02f306efce4d35876369f1e3410525
publication status: peer_reviewed
media type: application/json
source locator: abstractText
hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence.
missing metadata: licence: reason: unreported; note: The retrieved record gives no licence
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved with two corrections, both applied: the MutFormer source licence is CC BY 4.0 per the arXiv abstract page, and the MetaRNN source locator now names the Background passage. Checked the 27 Chen 2020 descriptions row by row against Table 1 (PMC7033911) and spot-checked AlphaMissense, MisFit, popEVE, VARITY, MetaRNN, MutFormer and gMVP against their abstracts; accurate. Licences on the other new sources match Europe PMC.; receipt: data/omics/qa-descriptions-20261011-e/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1038/s42256-022-00561-w%22&format=json&resultType=core

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