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PROSTATA: a framework for protein stability assessment using transformers

Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 · Peer-reviewed

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1 evidence claim

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PROSTATA: description: Description Transformer-based model, built by knowledge transfer on a curated stability dataset, that predicts the change in protein stability on point mutation from sequence. (qa-descriptions-20261011-d-source-prostata: Abstract)

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PROSTATA

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25 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69 Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10651431/fullTextXML Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Hash scope SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Licence CC-BY-4.0 Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Media type application/xml Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Publication status peer_reviewed Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Retrieved at 2026-10-11T01:30:46Z Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review: date 2026-10-11 Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact
Review method 2 values automated-source-review ai-assisted-source-review Source metadata	PROSTATA: a framework for protein stability assessment using transformers Original source ↗ No field-specific location recorded Version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023 Retrieved: 2026-10-11T01:30:46Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69` Hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence. Inspected artifact

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Source text retrieved and hashed for the issue #88 category-only description fix.

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Stable ID: qa-descriptions-20261011-d-source-prostata

url: https://doi.org/10.1093/bioinformatics/btad671
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10651431/fullTextXML
version: Europe PMC full-text XML for PMC10651431, Bioinformatics 2023
retrieved at: 2026-10-11T01:30:46Z
artifact sha256: 6f94f73ccd2a97c7dd08d0c5396b48df9fea17b464b678364000d27bb98e7e69
publication status: peer_reviewed
media type: application/xml
source locator: Abstract; Results
hash scope: SHA-256 of one retrieval of the Europe PMC full-text XML. These renderings are not always byte-stable; the article text is the evidence.
licence: CC-BY-4.0
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the 16 Pancotti-derived descriptions word for word against PMC8921618 section 2.2, ESM therm, RaSP and ELASPIC-2 against Chu 2024, ThermoMPNN against Dieckhaus 2024, and ABYSSAL and phyloP against their abstracts; all match. Licences on the new sources are supported by Europe PMC, the PMC XML and Crossref.; receipt: data/omics/qa-descriptions-20261011-d/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC10651431/fullTextXML

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