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Abstract: SCANPY: large-scale single-cell gene expression data analysis

Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 · Peer-reviewed

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1 evidence claim

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Scanpy: description: Description Python toolkit for single-cell gene expression analysis, with methods for preprocessing, visualisation, clustering, trajectory inference and differential expression testing. (qa-descriptions-20261011-b-source-scanpy: abstractText; coverage-source-scfoundation-supp: Supplementary Table 4)

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Scanpy

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25 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1186/s13059-017-1382-0%22&format=json&resultType=core Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Hash scope SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Licence CC-BY-4.0 Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Media type application/json Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Publication status peer_reviewed Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Retrieved at 2026-10-11T00:59:01Z Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Review: date 2026-10-11 Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.date` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Review: method note Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record. Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact
Review method 2 values automated-source-review ai-assisted-source-review Source metadata	Abstract: SCANPY: large-scale single-cell gene expression data analysis Original source ↗ No field-specific location recorded Version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018 Retrieved: 2026-10-11T00:59:01Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb` Hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence. Inspected artifact

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

Source text retrieved and hashed for the issue #88 placeholder-description fix.

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Stable ID: qa-descriptions-20261011-b-source-scanpy

url: https://doi.org/10.1186/s13059-017-1382-0
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1186/s13059-017-1382-0%22&format=json&resultType=core
version: Europe PMC core record MED/29409532 (title and abstract), Genome biology 2018
retrieved at: 2026-10-11T00:59:01Z
artifact sha256: 2ccec8651e795ef20410dda5c5d8d0010be3cb02f3b5f697c5e5404165bc6fdb
publication status: peer_reviewed
media type: application/json
source locator: abstractText
hash scope: SHA-256 of one retrieval of a Europe PMC REST search response. These responses are not byte-stable (a later retrieval can differ in JSON key order); the title and abstractText fields are the evidence.
licence: CC-BY-4.0
review: method: automated-source-review; ai-assisted-source-review; reviewer: claude; reviewer note: Extractor: Claude integrator agent for issue #88. Reviewer: a separate Claude review agent, independent of the extractor; no human review claimed.; date: 2026-10-11; method note: Compared the store diff with origin/main, read each new description against its cited source passage and checked the licence of each new source record.; note: Approved. Checked the new sources' licences against the arXiv abstract pages and Europe PMC, the 7 scFoundation pipeline descriptions against their abstracts, the language-model descriptions against their model cards and reports, and the TAPE architecture figures against the TAPE paper; all correct. The catalogue entries reuse reviewed profile summaries.; receipt: data/omics/qa-descriptions-20261011-b/review.json; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI%3A%2210.1186/s13059-017-1382-0%22&format=json&resultType=core

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