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ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py

3f4c81ce066f3c47422a83466b085aac1a6be902 · Project source

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2 protocols
2 evidence claims

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Relevance of feng-dna-fm-20261013-protocol-gtex-wb-expression-6kb to "Select regulatory variants and genes for functional follow-up": Assessed by Feng GTEx whole-blood expression prediction, all genes, 6 kb input (evidence-expansion-dna-foundation-models-2025-5d8ca9bc: Table 4)
Relevance of feng-dna-fm-20261013-protocol-gtex-wb-expression-long-768 to "Select regulatory variants and genes for functional follow-up": Assessed by Feng GTEx whole-blood expression prediction, 768 genes, long input (evidence-expansion-dna-foundation-models-2025-5d8ca9bc: Table 4)

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Protocols (2)

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24 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788 Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://raw.githubusercontent.com/ChongWuLab/dna_foundation_benchmark/3f4c81ce066f3c47422a83466b085aac1a6be902/job_scripts/gtex_hyena.py Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Licence MIT Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.licence` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Media type text/x-python Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.media_type` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Publication status official_project_source Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.publication_status` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-10-13T14:08:10Z Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review: artifact sha256 a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788 Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.artifact_sha256` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review: method note Re-downloaded and matched; read in full. Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method_note` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review method 2 values source-hash-verification ai-assisted-source-review Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review note Identity, version, licence and limitations checked against the artifact. Source metadata	ChongWuLab/dna_foundation_benchmark job_scripts/gtex_hyena.py Original source ↗ No field-specific location recorded Version: 3f4c81ce066f3c47422a83466b085aac1a6be902 Retrieved: 2026-10-13T14:08:10Z	catalogued No individual claim review recorded Audit details Field: `attributes.review.note` Source artifact SHA-256: `a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Author job script for HyenaDNA gene-expression embeddings, pinned to a commit for rewire-benchmark-data#19.

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Technical metadata and extraction receipts

Stable ID: feng-dna-fm-20261013-source-gtex-hyena-script

areas: dna-genomes
contexts: research
url: https://github.com/ChongWuLab/dna_foundation_benchmark/blob/3f4c81ce066f3c47422a83466b085aac1a6be902/job_scripts/gtex_hyena.py
artifact url: https://raw.githubusercontent.com/ChongWuLab/dna_foundation_benchmark/3f4c81ce066f3c47422a83466b085aac1a6be902/job_scripts/gtex_hyena.py
artifact sha256: a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788
version: 3f4c81ce066f3c47422a83466b085aac1a6be902
retrieved at: 2026-10-13T14:08:10Z
publication status: official_project_source
licence: MIT
media type: text/x-python
review: method: source-hash-verification; ai-assisted-source-review; method note: Re-downloaded and matched; read in full.; reviewer: claude; reviewer note: Independent Claude (Opus 5.5) review agent, separate from the extraction agent feng-19 that built this batch. Automated review only; no human review claimed. Transcription, not reproduction.; reviewed at: 2026-10-13T14:40:00Z; artifact sha256: a9ab37677da4340d3d5ea3b7516d71bf4e60d7cb2eab39eb954584d738ed2788; retrieval url: https://raw.githubusercontent.com/ChongWuLab/dna_foundation_benchmark/3f4c81ce066f3c47422a83466b085aac1a6be902/job_scripts/gtex_hyena.py; note: Identity, version, licence and limitations checked against the artifact.

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