Source

bowang-lab/scGPT README.md

cebd6fae655b9c585a4807daa3ac31bb764f06b4

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3 configurations
1 pipeline
1 evidence claim

Claims

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scGPT + residual geometry: description: Description Adds geometric features of the scGPT residual stream, including centred cosine similarity between gene vectors and PCA projections, to an expression baseline for predicting transcription-factor-target links. (Reviewed profile (2026-09-16): summary at Results/Residual-stream geometry carries regulatory signal beyond expression confounds (paragraph 1); Background (paragraph 7); architecture fact at Methods/Geometric feature extraction (paragraph 2); Results/Residual-stream geometry carries regulatory signal beyond expression confounds (paragraph 1); description text also read at Abstract/Results; Results (per-feature comparison table))

Models, benchmarks and other records

Configurations (3)

Pipelines (1)

scGPT + residual geometry

Evidence

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Evidence table

Inspect claims, sources and review details

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14 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact SHA-256 b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83 Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Artifact url https://raw.githubusercontent.com/bowang-lab/scGPT/cebd6fae655b9c585a4807daa3ac31bb764f06b4/README.md Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Retrieved at 2026-09-16T20:00:00.816587+00:00 Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review method 1 values automated-source-review Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Review: scope Explanatory metadata only; no new numerical result or independent reproduction. Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.scope` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Url https://github.com/bowang-lab/scGPT/blob/cebd6fae655b9c585a4807daa3ac31bb764f06b4/README.md Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Version cebd6fae655b9c585a4807daa3ac31bb764f06b4 Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Description Primary-source artifact inspected during the configuration-profile evidence review. Its licence and scope are not inherited by unrelated models or data. Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Search facets None recorded Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `facets` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Record ID evidence-reported-base-scgpt-readme-md Source metadata	bowang-lab/scGPT README.md Original source ↗ No field-specific location recorded Version: cebd6fae655b9c585a4807daa3ac31bb764f06b4 Retrieved: 2026-09-16T20:00:00.816587+00:00	catalogued No individual claim review recorded Audit details Field: `id` Source artifact SHA-256: `b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Primary-source artifact inspected during the configuration-profile evidence review. Its licence and scope are not inherited by unrelated models or data.

Release history

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Technical metadata and extraction receipts

Stable ID: evidence-reported-base-scgpt-readme-md

artifact sha256: b0503e8ca789f19f1fc2350c5aaf57b1b323bbae43b354655231b5f4a1586c83
artifact url: https://raw.githubusercontent.com/bowang-lab/scGPT/cebd6fae655b9c585a4807daa3ac31bb764f06b4/README.md
retrieved at: 2026-09-16T20:00:00.816587+00:00
url: https://github.com/bowang-lab/scGPT/blob/cebd6fae655b9c585a4807daa3ac31bb764f06b4/README.md
version: cebd6fae655b9c585a4807daa3ac31bb764f06b4
review: method: automated-source-review; scope: Explanatory metadata only; no new numerical result or independent reproduction.

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