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snap-stanford/GEARS: README.md

f374e43e197b295016d80395d7a54ddb81cc6769

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2 models
4 evidence claims
1 use case

Claims

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GEARS: alias of GEARS: Alias of GEARS (Pinned official README introduction and model identity; scVI additionally docs/user_guide/models/scvi.md heading)
GEARS: description: Description GEARS predicts transcriptional responses to single- and multi-gene perturbations from single-cell perturbation screens. (Reviewed profile summary (2026-09-16): evidence-official-c037e3419c04936262a0, evidence-official-b5e81b2c497214b18f8a, evidence-official-f464cd407a6a9d031720: GEARS paper Methods: Overview, Gene coexpression graph encoder, GO graph, Cross-gene effects and gene-specific decoder; gears/model.py: GEARS_Model)
Relevance of GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE to "Assess models for genetic perturbation experiments": Assessed by GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE (coverage-source-gears-supp: Supplementary Table 6, printed page 34 / PDF page 35; Supplementary Table 1, PDF page 30; Supplementary Notes 5 and 14 (K562 context).; evidence-official-c037e3419c04936262a0: README.md at f374e43e197b295016d80395d7a54ddb81cc6769, A note on usage (lines 15–19) and Core API Interface (lines 20–54).)
Relevance of GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE to "Assess models for genetic perturbation experiments": Assessed by GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE (coverage-source-gears-supp: Supplementary Table 6, printed page 34 / PDF page 35; Supplementary Table 1, PDF page 30; Supplementary Notes 5 and 14 (K562 context).; evidence-official-c037e3419c04936262a0: README.md at f374e43e197b295016d80395d7a54ddb81cc6769, A note on usage (lines 15–19) and Core API Interface (lines 20–54).)

Models, benchmarks and other records

Models (2)

Use cases (1)

Assess models for genetic perturbation experiments

Evidence

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Evidence table

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18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact format original_artifact Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_format` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Artifact SHA-256 fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Artifact url https://raw.githubusercontent.com/snap-stanford/GEARS/f374e43e197b295016d80395d7a54ddb81cc6769/README.md Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Hash scope SHA-256 of retrieved original artifact bytes Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Retrieval note Direct source retrieval Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieval_note` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Retrieved at 2026-09-16T19:46:20.191253+00:00 Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Review method 1 values automated-source-review Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Review: scope Only cited profile claims; no numerical performance result added or independently reproduced. Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.scope` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Source location README.md Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Url https://github.com/snap-stanford/GEARS/blob/f374e43e197b295016d80395d7a54ddb81cc6769/README.md Source metadata	snap-stanford/GEARS: README.md Original source ↗ No field-specific location recorded Version: f374e43e197b295016d80395d7a54ddb81cc6769 Retrieved: 2026-09-16T19:46:20.191253+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: evidence-official-c037e3419c04936262a0

url: https://github.com/snap-stanford/GEARS/blob/f374e43e197b295016d80395d7a54ddb81cc6769/README.md
artifact url: https://raw.githubusercontent.com/snap-stanford/GEARS/f374e43e197b295016d80395d7a54ddb81cc6769/README.md
version: f374e43e197b295016d80395d7a54ddb81cc6769
retrieved at: 2026-09-16T19:46:20.191253+00:00
artifact sha256: fe78b7b1ede50c673b8f0d91fb2637707685c78b269ee157edb6cbc4d510d61b
artifact format: original_artifact
hash scope: SHA-256 of retrieved original artifact bytes
retrieval note: Direct source retrieval
source locator: README.md
review: method: automated-source-review; scope: Only cited profile claims; no numerical performance result added or independently reproduced.

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