Source

scfoundation-preprint: Primary paper PDF

bioRxiv manuscript posted 2023-06-15

Original source

What this source contributed

Records in this release that cite this source. A record can cite several sources.

1 model
1 pipeline
2 evidence claims

Claims

Statements this source supports, each with where in the source it was checked.

scFoundation: description: Description Cell-type annotation with scFoundation, a model that produces contextual cell and gene representations from gene-expression measurements. (catalog-model-scfoundation profile summary (evidence-official-9863509ad10b824dc96b: Results pre-training framework; Methods Embedding, Encoder, Decoder); coverage-source-scfoundation-supp: Supplementary Table 4)
scFoundation: description: Description scFoundation produces contextual cell and gene representations from gene-expression measurements. (Reviewed profile summary (2026-09-16): evidence-official-bfbc8babf3630ddb3ed7, evidence-official-7972ce2bdd6a5e40d8ad, evidence-official-9863509ad10b824dc96b: June 15 2023 scFoundation manuscript: Results pre-training framework; Methods Data collection, Embedding, Encoder, Decoder and Read-depth-aware pre-training; official model README)

Models, benchmarks and other records

Models (1)

scFoundation

Pipelines (1)

scFoundation

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Artifact format original_artifact Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_format` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Artifact SHA-256 e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737 Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Artifact url https://yiheng-zhu.github.io/Yiheng/papers/5/scFoundation_bioRxiv_2023.pdf Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Hash scope SHA-256 of retrieved original artifact bytes Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Retrieval note Direct source retrieval Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieval_note` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Retrieved at 2026-09-16T20:35:33.635910+00:00 Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Review method 1 values automated-source-review Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.method` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Review: scope Only cited profile claims; no numerical performance result added or independently reproduced. Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.review.scope` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Source location Primary paper PDF Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact
Url https://yiheng-zhu.github.io/Yiheng/papers/5/scFoundation_bioRxiv_2023.pdf Source metadata	scfoundation-preprint: Primary paper PDF Original source ↗ No field-specific location recorded Version: bioRxiv manuscript posted 2023-06-15 Retrieved: 2026-09-16T20:35:33.635910+00:00	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737` Hash scope: SHA-256 of retrieved original artifact bytes Format: original_artifact Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Primary-source artifact retrieved for field-level model-profile review. Source inspection is not independent model reproduction.

Release history

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Technical metadata and extraction receipts

Stable ID: evidence-official-9863509ad10b824dc96b

url: https://yiheng-zhu.github.io/Yiheng/papers/5/scFoundation_bioRxiv_2023.pdf
artifact url: https://yiheng-zhu.github.io/Yiheng/papers/5/scFoundation_bioRxiv_2023.pdf
version: bioRxiv manuscript posted 2023-06-15
retrieved at: 2026-09-16T20:35:33.635910+00:00
artifact sha256: e2ce9d623a09b53eb863ae6ca359fe2956b7b0a7c3ebe7de6911aca3a660f737
artifact format: original_artifact
hash scope: SHA-256 of retrieved original artifact bytes
retrieval note: Direct source retrieval
source locator: Primary paper PDF
review: method: automated-source-review; scope: Only cited profile claims; no numerical performance result added or independently reproduced.

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