EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning
2026 · journal full text in PMC · Peer-reviewed
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Results
Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.
| Model or configuration | Metric | Value | Dataset | Evaluation |
|---|---|---|---|---|
| DNABERT-2 | MCC | 70.52 unitless | GUE H-CPD | DNABERT-2: human core-promoter classification |
Claims
Statements this source supports, each with where in the source it was checked.
- DNABERT-2: family DNABERT-2: Family DNABERT-2 (Cited primary paper comparison table and DNABERT-2 methods; official DNABERT-2 README; source-labelled configuration DNABERT-2 | Existing reviewed locator: Experimental setup, results, and discussion/Comparison with state-of-the-art methods (paragraph 12); Experimental setup, results, and discussion/Comparison with state-of-the-art methods (paragraph 2))
- Reported MCC for DNABERT-2: Printed value 70.52 (Table 5, DNABERT-2 row, H-CPD (MCC) column)
Models, benchmarks and other records
Configurations (1)
Tasks (1)
Datasets (1)
Evaluations (1)
Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact retrieved at 2026-09-16T10:33:37.531Z Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact SHA-256 38a6e26b3caffe8e021a2b0b672218e783aca9ee42046765e323946813015e65 Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12879454/fullTextXML Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Doi 10.1186/s12859-026-06367-6 Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Missing metadata: licence: reason unextracted Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Publication status peer_reviewed Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-15T23:33:26Z Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Scope decision included Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://pmc.ncbi.nlm.nih.gov/articles/PMC12879454/ Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version journal full text in PMC Source metadata | EDEN: multiscale expected density of nucleotide encoding for enhanced DNA sequence classification with hybrid deep learning No field-specific location recorded Version: journal full text in PMC | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: discovered
Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.
Technical metadata and extraction receipts
Stable ID: eden-genomic-classification-2026
- areas
- dna-genomes
- url
- https://pmc.ncbi.nlm.nih.gov/articles/PMC12879454/
- version
- journal full text in PMC
- retrieved at
- 2026-09-15T23:33:26Z
- doi
- 10.1186/s12859-026-06367-6
- publication status
- peer_reviewed
- year
- 2026
- artifact sha256
- 38a6e26b3caffe8e021a2b0b672218e783aca9ee42046765e323946813015e65
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12879454/fullTextXML
- artifact retrieved at
- 2026-09-16T10:33:37.531Z
- scope decision
- included
- missing metadata
- licence: reason: unextracted