Source

A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies

Primary source retrieved and hashed for the CNV detection use-case pass.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-09-8eac2440869c
Property and statement	Original source and location	Review and provenance
attributes.artifact_sha256 45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8 Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.artifact_url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12383524/fullTextXML Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.doi 10.3390/biomedicines13081949 Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.doi` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.evidence_concerns 1 values source id cnv-20261009-source-nardone2025 message Results 3.1 prose gives inGAP in the 5000-9999 bp bin as F1 97%, precision 92%, recall 94%. Table S1 rows for inGAP 5000-9999 print F1 0.9466, precision 0.9714, recall 0.9231. The prose values are not consistent with each other (F1 cannot exceed both precision and recall) or with the table. Table values are recorded; prose values are not. source locator Results 3.1 paragraph 2 versus TableS1.xlsx Method inGAP, Interval 5000-9999 artifact sha256 45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8 reviewed at 2026-10-09T15:40:00Z review method automated-source-review Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.evidence_concerns` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.licence CC-BY-4.0 Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.licence` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.media_type application/xml Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.media_type` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.publication_status peer_reviewed Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.publication_status` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.retrieved_at 2026-10-09T15:28:17Z Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.url https://doi.org/10.3390/biomedicines13081949 Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.url` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.version Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Source metadata	A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies Original source ↗ No field-specific location recorded Version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML Retrieved: 2026-10-09T15:28:17Z	catalogued No individual claim review recorded Source has a recorded evidence concern. Consult its source page before using the claim. Audit details Field: `attributes.version` Source artifact SHA-256: `45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

All evidence (JSONL) (gzip)How to read the evidence

Sources and history

Release 2026-10-09-8eac2440869c · Record review: source checked

0 source records and release history

No supporting source is linked yet.

Read original source

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: cnv-20261009-source-nardone2025

areas: dna-genomes
contexts: clinical_research
url: https://doi.org/10.3390/biomedicines13081949
artifact url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12383524/fullTextXML
version: Biomedicines 13(8):1949, published 2025-08-09; PMC12383524 full-text XML
retrieved at: 2026-10-09T15:28:17Z
artifact sha256: 45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8
doi: 10.3390/biomedicines13081949
publication status: peer_reviewed
licence: CC-BY-4.0
media type: application/xml
evidence concerns: source id: cnv-20261009-source-nardone2025; message: Results 3.1 prose gives inGAP in the 5000-9999 bp bin as F1 97%, precision 92%, recall 94%. Table S1 rows for inGAP 5000-9999 print F1 0.9466, precision 0.9714, recall 0.9231. The prose values are not consistent with each other (F1 cannot exceed both precision and recall) or with the table. Table values are recorded; prose values are not.; source locator: Results 3.1 paragraph 2 versus TableS1.xlsx Method inGAP, Interval 5000-9999; artifact sha256: 45317b1396f900fd8bcbe6e95519a4b475fda4c5ee416c63752811b71e154eb8; reviewed at: 2026-10-09T15:40:00Z; review method: automated-source-review

Related records

Suggest a correction