yes success-rate
meyer2022-metaphlan-v2-2-0 success-rate (submitted causal-pathogen prediction is CCHFV)
- Tested configuration
- MetaPhlAn v2.2.0 (CAMI II pathogen challenge submission)
- Protocol
- Identify all pathogens and the causal pathogen in one clinical blood metagenome (CAMI II clinical pathogen challenge)
- Dataset
- CAMI II clinical pathogen challenge: blood metagenome from a patient with haemorrhagic fever
- Procedure
- rna-pathogen-20261009-protocol-meyer2022-causal-pathogen
- Evaluation
- MetaPhlAn v2.2.0: CAMI II clinical pathogen challenge
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Evaluation origin not reported · source checkedMeyer et al. 2022, Supplementary Tables 1-40 · Supplementary Table 39 cell C6, row 'MetaPhlAn v2.2.0', column 'Predicted causal pathogen'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Single sample
- Adaptation
- Submitter's own database and curation
- Scoring implementation
- Organisers' comparison with CCHFV
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result yes Individual claims | Meyer et al. 2022, Supplementary Tables 1-40 Supplementary Table 39 cell C6, row 'MetaPhlAn v2.2.0', column 'Predicted causal pathogen' Version: 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3"> | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-09 unreported Audit detailsExtracted by deterministic parse of the pinned XLSX cell XML (extract/extract_rna_pathogen.py), with row and column labels asserted. printed_value is the cell text, or the shortest decimal that round-trips to the stored number; displayed spreadsheet formatting was not applied. Pending independent review. Independent review 2026-10-09: value and identity match the source. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-09-8cc1db47c7f9 · Record review: source checked
2 source records and release history
- Meyer et al. 2022, Supplementary Tables 1-40 · Original source · 41592_2022_1431_MOESM3_ESM.xlsx (Supplementary Tables), as linked from the article XML <supplementary-material id="MOESM3">
- Critical Assessment of Metagenome Interpretation: the second round of challenges · Original source · Nature Methods 19(4):429, published 2022-04-08; PMC9007738 full-text XML
Technical metadata and extraction receipts
Stable ID: rna-pathogen-20261009-result-meyer2022-metaphlan-v2-2-0-predicted-causal
- metric
- success-rate
- metric direction
- higher
- unit
- unitless
- printed value
- yes
- numeric value
- Not reported
- source locator
- Supplementary Table 39 cell C6, row 'MetaPhlAn v2.2.0', column 'Predicted causal pathogen'
- missing metadata
- uncertainty: reason: unreported
- metric qualifier
- submitted causal-pathogen prediction is CCHFV
- criterion
- submitted causal-pathogen prediction is CCHFV; categorical yes/no outcome on one sample, so numeric_value is null
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; reviewer: claude; reviewer note: Separate Claude review agent, independent of the extractor; no human review claimed; date: 2026-10-09; artifact sha256: 9a5ebd2364bb2660ea841227b9d04848b9c60b4d3c2a9f4939fc5994efc851ce; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41592-022-01431-4/MediaObjects/41592_2022_1431_MOESM3_ESM.xlsx; method note: Re-downloaded the workbook and matched its SHA-256. Read Meyer et al. Supplementary Table 39 with a separate stdlib OOXML reader written for this review (the extractor's script was not run). Checked printed and numeric value, locator, metric, unit and direction from the headers, and the evaluation's configuration, protocol and dataset.; note: Extracted by deterministic parse of the pinned XLSX cell XML (extract/extract_rna_pathogen.py), with row and column labels asserted. printed_value is the cell text, or the shortest decimal that round-trips to the stored number; displayed spreadsheet formatting was not applied. Pending independent review. Independent review 2026-10-09: value and identity match the source.