Success rate (GDT-TS above the CASP16 threshold) of RhoFold+ 0.0.1 (Ludaic and Elofsson 2026 RNA benchmark run) on Ludaic and Elofsson 2026 Monomeric RNA easy set
66.7% Success rate (GDT-TS above the CASP16 threshold)
Methods
- Tested configuration
- RhoFold+ 0.0.1 (Ludaic and Elofsson 2026 RNA benchmark run)
- Protocol
- Ludaic and Elofsson 2026 Monomeric RNA easy set, GDT-TS success rate
- Dataset
- Ludaic and Elofsson 2026 Monomeric RNA easy set
- Procedure
- Ludaic and Elofsson 2026 Monomeric RNA easy set, GDT-TS success rate
- Evaluation
- RhoFold+ on Monomeric RNA easy set (GDT-TS, success rate)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedLimits of deep-learning-based RNA prediction methods: Supplementary Data; Limits of deep-learning-based RNA prediction methods · Supplementary Table S6, row 'GDT-TS', column 'RhoFold+'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Easy (structurally similar to training data)
- Adaptation
- Default settings, no retraining; top-ranked of five models
- Scoring implementation
- CASP16 thresholds: TM-score > 0.45, GDT-TS > 0.45, INF > 0.75, lDDT > 0.75
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 66.67% Individual claims | Limits of deep-learning-based RNA prediction methods Supplementary Table S6, row 'GDT-TS', column 'RhoFold+' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nucleic Acids Research 2026, gkag813 (issue date 2026-08-01); PMC13501138 full-text XML | source checked ["source-hash-verification","pdf-text-parse","independent-cell-check"] · 2026-10-12 independent paper Audit detailsExtraction: Parsed the pdftotext -layout text of the pinned supplementary PDF with extract/extract_rna3d.py; method order taken from the printed header row. Table S6 body row 2. Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration and protocol checked. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
| Reported result 66.67% Individual claims | Limits of deep-learning-based RNA prediction methods: Supplementary Data Supplementary Table S6, row 'GDT-TS', column 'RhoFold+' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: gkag813_supplemental_file.pdf from the Europe PMC supplementary files archive for PMC13501138 | source checked ["source-hash-verification","pdf-text-parse","independent-cell-check"] · 2026-10-12 independent paper Audit detailsExtraction: Parsed the pdftotext -layout text of the pinned supplementary PDF with extract/extract_rna3d.py; method order taken from the printed header row. Table S6 body row 2. Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration and protocol checked. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- Limits of deep-learning-based RNA prediction methods: Supplementary Data · Original source · gkag813_supplemental_file.pdf from the Europe PMC supplementary files archive for PMC13501138
- Limits of deep-learning-based RNA prediction methods · Original source · Nucleic Acids Research 2026, gkag813 (issue date 2026-08-01); PMC13501138 full-text XML
Technical metadata and extraction receipts
Stable ID: lit-rna-20261011-rna3d-result-rhofold-plus-monomer-easy-success-gdt-ts
- metric
- success-rate
- metric direction
- higher
- unit
- percent
- printed value
- 66.67%
- source locator
- Supplementary Table S6, row 'GDT-TS', column 'RhoFold+'
- review
- method: source-hash-verification; pdf-text-parse; independent-cell-check; method note: Re-fetched the PMC XML and the supplementary PDF and matched their SHA-256. An independent parse of Tables 2-5 and Supplementary Tables S6, S7 and S15 (pdftotext -layout and -raw) matched all 216 printed and numeric values and locators; 42 cells were also checked by hand. Success rates in S6-S7 were recomputed from S2-S5 as a consistency check, not as a derivation.; reviewer: claude; reviewer note: Claude review agent reviewer-ro-1, independent of the extractor lit-rna-otheromics; no human review claimed; date: 2026-10-12; artifact sha256: 0e26a301a5b5c39a0e2dfaa092760d6099345dcb9e0545e23b730374f39d463c; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13501138/supplementaryFiles; note: Extraction: Parsed the pdftotext -layout text of the pinned supplementary PDF with extract/extract_rna3d.py; method order taken from the printed header row. Table S6 body row 2. Independent review 2026-10-12: value, locator, metric, unit, direction and linked configuration and protocol checked.
- numeric value
- 66.67
- metric qualifier
- GDT-TS above the CASP16 threshold
- missing metadata
- uncertainty: reason: unreported