Result

Spearman (GUANinE v1.1 test set) of GENA-LM-bert-base-t2t-enf (1% eval (evaluated with 1% of the training set), GUANinE v1.1) on GUANinE gpra-c test set

70.6 Spearman (GUANinE v1.1 test set)

Methods

Tested configuration: GENA-LM-bert-base-t2t-enf (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
Protocol: GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2)
Dataset: GUANinE gpra-c test set
Procedure: GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2)
Evaluation: GENA-LM-bert-base-t2t-enf on GUANinE gpra-c
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source
Evidence: Independent external evaluation · source checkedGUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GENA-LM-bert-base-t2t-enf', column 'gpra-c' (ρ)

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Test set
Adaptation: 1% eval (evaluated with 1% of the training set)
Scoring implementation: Spearman rho x100 as printed

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Reported result 70.63 Individual claims	GUANinE v1.1 reveals complementarity of supervised and genomic language models Original source ↗ Table 2, row 'GENA-LM-bert-base-t2t-enf', column 'gpra-c' (ρ) Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML Retrieved: 2026-10-11T00:40:24Z	source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-11 independent paper Audit details Extraction: Parsed the <td> cells of the pinned PMC XML table with tools/extract_guanine.py; row label and column header taken from the same table row and header rows. Table 2 body row 21. Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md. Field: `attributes.printed_value` Source artifact SHA-256: `f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79` Extraction artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Original source · Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-guanine-result-gena-lm-bert-base-t2t-enf-1pct-gpra-c

metric: spearman-correlation
metric direction: higher
unit: unitless
printed value: 70.63
source locator: Table 2, row 'GENA-LM-bert-base-t2t-enf', column 'gpra-c' (ρ)
review: method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Matched the archived XML's SHA-256 and compared all 225 results with an independent <td> parse of Tables 2-4: printed and numeric values, column mapping and Eval mode all match.; reviewer: claude; reviewer note: Claude review agent reviewer-gen-3, independent of the extractor lit-genomics; no human review claimed; date: 2026-10-11; artifact sha256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13501288/fullTextXML; note: Extraction: Parsed the <td> cells of the pinned PMC XML table with tools/extract_guanine.py; row label and column header taken from the same table row and header rows. Table 2 body row 21. Independent review 2026-10-11: value, locator, metric, unit, direction and linked configuration and protocol checked; corrections from the review applied by the extractor as listed in review.md.
numeric value: 70.63
metric qualifier: GUANinE v1.1 test set
unit detail: Printed as Spearman rho x100
missing metadata: uncertainty: reason: unreported

Related records

evaluation: GENA-LM-bert-base-t2t-enf on GUANinE gpra-c

Suggest a correction