Result

0.753 F1 score

MetaPhlAn3 · F1 score · CAMI II Toy human gastrooral sample19-new

Tested configuration: MetaPhlAn3
Task: Metagenomic taxonomic classification
Dataset: CAMI II Toy human gastrooral sample19-new
Procedure: Newly generated sample19 used for classifier comparison.
Evaluation: MetaPhlAn3: Metagenomic taxonomic classification
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedAdvancing metagenomic classification with NABAS+: a novel alignment-based approach · Table 3, Sample19-new / MetaPhlAn3 row, F1 score column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

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Access requirements and official instructions: Metagenomic taxonomic classification

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.753 Individual claims	Advancing metagenomic classification with NABAS+: a novel alignment-based approach Original source ↗ Table 3, Sample19-new / MetaPhlAn3 row, F1 score column Version: PMC12231603.1 Retrieved: 2026-09-16T10:41:16.546107+00:00	source checked independent ai table review · 2026-09-16T10:41:16.547023+00:00 independent paper Audit details Selected Sample19-new explicitly, not Sample19-old, and F1 rather than precision/recall. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-040 Source artifact SHA-256: `49903e751beb86f6744825d2fdb3ea2fbe327b52b1ce68c323bfa8b66dae71ec` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `49903e751beb86f6744825d2fdb3ea2fbe327b52b1ce68c323bfa8b66dae71ec` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Advancing metagenomic classification with NABAS+: a novel alignment-based approach · Original source · PMC12231603.1

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Technical metadata and extraction receipts

Stable ID: lit-040

areas: microbes-communities
tasks: Metagenomic taxonomic classification
printed value: 0.753
numeric value: 0.753
metric: F1 score
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 3, Sample19-new / MetaPhlAn3 row, F1 score column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.547023+00:00; notes: Selected Sample19-new explicitly, not Sample19-old, and F1 rather than precision/recall. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "tbl3", "row_cells": ["Sample19-new", "MetaPhlAn3", "0.778", "0.729", "0.753"], "selected_cell_zero_based": 4, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.753</td>", "caption": "Performance of the classifier on the original and newly generated sample19"}; artifact sha256: 49903e751beb86f6744825d2fdb3ea2fbe327b52b1ce68c323bfa8b66dae71ec; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12231603/fullTextXML
legacy id: lit-040
legacy row: id: lit-040; paper id: nabas-plus-2025; domain id: microbes-communities; task: Metagenomic taxonomic classification; model: MetaPhlAn3; model version: Not reported; dataset: CAMI II Toy human gastrooral sample19-new; dataset version: Not reported; split: Not reported; metric: F1 score; value: 0.753; unit: unitless; uncertainty: Not reported; protocol: Newly generated sample19 used for classifier comparison.; source locator: Table 3, Sample19-new / MetaPhlAn3 row, F1 score column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12231603/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: MetaPhlAn3: Metagenomic taxonomic classification
subject: Reported F1 score for MetaPhlAn3

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