rewirebio.iobenchmarks
Result

AUROC of FUJISAN on FUJISAN test sub-dataset

0.943 AUROC

Methods

Tested configuration
FUJISAN
Protocol
Enzyme-pair functional identity: original held-out test (Enzyme functional identity prediction)
Dataset
FUJISAN test sub-dataset
Procedure
LightGBM FUJISAN and comparison methods; predictions thresholded to maximizeF 1. Protein-pair splitting is not evidence of disjoint proteins or families. 41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
Evaluation
FUJISAN: Enzyme functional identity prediction
Coverage
Not reported scored / Not reported eligible
Uncertainty
Not yet extracted
Evidence
Author-reported evaluation · source checkedEnhanced prediction of protein functional identity through the integration of sequence and structural features; Enhanced prediction of protein functional identity through the integration of sequence and structural features · Table 1, FUJISAN row, AUROC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split
41,600 protein pairs; balanced functional-identity classes; random 56.25/18.75/25% training/validation/test split.
Adaptation
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Scoring implementation
Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Metric direction
higher
Individual claims
Enhanced prediction of protein functional identity through the integration of sequence and structural features

Original source ↗

Table 1, row FUJISAN, column AUROC; XML row2 column8

Version: PMC11609699.1
Retrieved: 2026-09-17T07:56:15.783679+00:00

source checked

["automated-source-review"] · 2026-09-17

author reported

Audit details

Field: attributes.metric_direction

Claim: paper-claim-ba3e5648910623299d

Source artifact SHA-256: db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Printed value
0.9427
Individual claims
Enhanced prediction of protein functional identity through the integration of sequence and structural features

Original source ↗

Table 1, FUJISAN row, AUROC column

Version: PMC11609699.1
Retrieved: 2026-09-16T10:33:35.728Z

source checked

["independent-cell-check"] · 2026-09-16T10:33:35.728Z

author reported

Audit details

Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.

Field: attributes.printed_value

Claim: claim-lit-019

Source artifact SHA-256: db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Extraction artifact SHA-256: db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f

Extraction artifact

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: lit-019

areas
proteins-complexes
tasks
Enzyme functional identity prediction
printed value
0.9427
numeric value
0.9427
metric
auroc
metric direction
higher
unit
unitless
source locator
Table 1, FUJISAN row, AUROC column
review
method: independent-cell-check; reviewer: rewire-deterministic-table-checker; reviewed at: 2026-09-16T10:33:35.728Z; evidence: Table 1, FUJISAN row, AUROC column; cell: 0.9427; artifact sha256: db33e0542005ffae00cd644dfe697185b94c8823d5aee2768620a6db0c48e56f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11609699/fullTextXML; method note: primary XML source; exact label and cell match; reviewer note: version v1; note: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.
legacy id
lit-019
missing metadata
dataset version: reason: unextracted; model version: reason: unextracted; split: reason: unextracted; uncertainty: reason: unextracted
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