0.814 F1
BPfold · F1 · PDB RNA set
- Tested configuration
- BPfold
- Protocol
- PDB (RNA secondary structure)
- Dataset
- PDB RNA set
- Procedure
- Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics.
- Evaluation
- BPfold: RNA secondary structure
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Author-reported evaluation · source checkedDeep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2, BPfold row, PDB F1 column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- Family-wise RNA secondary-structure evaluation; macro-average canonical base-pair metrics.
- Adaptation
- five-fold cross-validation; early stopping
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.metric_direction higher Individual claims | Deep generalizable prediction of RNA secondary structure via base pair motif energy Table 2 (Tab2), row 3 BPfold, column 7: PDB F1 Version: version of record | source checked automated source review · 2026-09-17 author reported Audit detailsField: Claim: paper-claim-bf082765830f25cd12 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.printed_value 0.814 Individual claims | Deep generalizable prediction of RNA secondary structure via base pair motif energy Table 2, BPfold row, PDB F1 column Version: version of record | source checked independent ai table review · 2026-09-16T10:41:16.502000+00:00 author reported Audit detailsPDB is the second four-metric block; its F1 is numeric column six, not Rfam F1. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: Claim: claim-lit-011 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- Deep generalizable prediction of RNA secondary structure via base pair motif energy · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-011
- areas
- rna-transcriptomes
- tasks
- RNA secondary structure
- printed value
- 0.814
- numeric value
- 0.814
- metric
- F1
- metric direction
- higher
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 2, BPfold row, PDB F1 column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.502000+00:00; notes: PDB is the second four-metric block; its F1 is numeric column six, not Rfam F1. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "Tab2", "row_cells": ["BPfold", "0.694", "0.689", "0.660", "0.741", "0.817", "0.814", "0.840", "0.801"], "selected_cell_zero_based": 6, "selected_cell_xml": "<td colspan=\"1\" rowspan=\"1\">0.814</td>", "caption": "Family-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold) and non-learning methods (LinearFold, RNAfold, SimFold, and RNAstructure) on Rfam12.3–14.10 (n = 10,791 RNAs) and PDB (n = 116 RNAs) datasets"}; artifact sha256: 976218bd172998a1a6e7ed1609ecb8cb2ee380fb48a8dc7b25bc05ea8b0a49af; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12216785/fullTextXML
- legacy id
- lit-011
- legacy row
- id: lit-011; paper id: bpfold-2025; domain id: rna-transcriptomes; task: RNA secondary structure; model: BPfold; model version: Not reported; dataset: PDB RNA set; dataset version: 116 RNAs; split: Not reported; metric: F1; value: 0.814; unit: unitless; uncertainty: Not reported; protocol: Family-wise evaluation of canonical base-pair predictions.; source locator: Table 2, BPfold row, PDB F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12216785/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: BPfold: RNA secondary structure
- subject: Reported F1 for BPfold
- subject: BPfold · F1 · PDB RNA set: attributes.metric_direction