Result

0.826 AUROC

Caduceus-Ph · AUROC · DNALongBench ETGP

Tested configuration: Caduceus-Ph
Task: Enhancer-target gene prediction
Dataset: DNALongBench ETGP
Procedure: Long-range ETGP benchmark; source table reports AUROC.
Evaluation: Caduceus-Ph: Enhancer-target gene prediction
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Independent external evaluation · source checkedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, Caduceus-Ph row, ETGP column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: Enhancer-target gene prediction

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
attributes.printed_value 0.826 Individual claims	DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks Original source ↗ Table 3, Caduceus-Ph row, ETGP column Version: PMC11741265.1 Retrieved: 2026-09-16T10:41:16.492545+00:00	source checked independent ai table review · 2026-09-16T10:41:16.493765+00:00 independent paper Audit details ETGP is the first numeric column, separate from the six CMP cell-type columns and average; caption defines ETGP AUROC. This verifies the central score at its source location, not every metadata field or an experimental reproduction. Field: `attributes.printed_value` Claim: claim-lit-008 Source artifact SHA-256: `fa440a17cecf16a5d872d50a30910f7591b5f6f78e10a944c6bda5ea8d7e32dd` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `fa440a17cecf16a5d872d50a30910f7591b5f6f78e10a944c6bda5ea8d7e32dd` Extraction artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Original source · PMC11741265.1

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Technical metadata and extraction receipts

Stable ID: lit-008

areas: dna-genomes
tasks: Enhancer-target gene prediction
printed value: 0.826
numeric value: 0.826
metric: AUROC
metric direction: unknown
unit: unitless
uncertainty: Not reported
source locator: Table 3, Caduceus-Ph row, ETGP column
review: method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.493765+00:00; notes: ETGP is the first numeric column, separate from the six CMP cell-type columns and average; caption defines ETGP AUROC. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "T3", "row_cells": ["Caduceus-Ph", "0.826", "0.153", "0.130", "0.101", "0.138", "0.145", "0.133"], "selected_cell_zero_based": 1, "selected_cell_xml": "<td align=\"center\" valign=\"middle\" rowspan=\"1\" colspan=\"1\">0.826</td>", "caption": "AUROC for enhancer-target gene prediction (ETGP) task and SCC scores for the contact map prediction (CMP) task. K562, HFF, H1hESC, GM12878, IMR90, and HCT116 represent different human cell types. The highest scores are highlighted in bold. “Avg” means the average score across different cell types. Notably, the Expert Model achieves the best performance on both ETGP and CMP tasks."}; artifact sha256: fa440a17cecf16a5d872d50a30910f7591b5f6f78e10a944c6bda5ea8d7e32dd; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11741265/fullTextXML
legacy id: lit-008
legacy row: id: lit-008; paper id: dnalongbench-2025; domain id: dna-genomes; task: Enhancer-target gene prediction; model: Caduceus-Ph; model version: Not reported; dataset: DNALongBench ETGP; dataset version: Not reported; split: Not reported; metric: AUROC; value: 0.826; unit: unitless; uncertainty: Not reported; protocol: Long-range ETGP benchmark; source table reports AUROC.; source locator: Table 3, Caduceus-Ph row, ETGP column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11741265/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata: model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract

Related records

evaluation: Caduceus-Ph: Enhancer-target gene prediction
subject: Reported AUROC for Caduceus-Ph

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