Result

Runtime (Average total time per compound on one NVIDIA H100 80 GB, DEKOIS 2.0 target ctsk) of Protenix, 5 samples, timed per compound on DEKOIS 2.0 speed subset, five targets with 400 decoys each

30 Runtime (Average total time per compound on one NVIDIA H100 80 GB, DEKOIS 2.0 target ctsk)

Methods

Tested configuration: Protenix, 5 samples, timed per compound
Protocol: Co-folding time per compound on five DEKOIS 2.0 targets (Shen et al. 2025 Table 5)
Dataset: DEKOIS 2.0 speed subset, five targets with 400 decoys each
Procedure: Co-folding time per compound on five DEKOIS 2.0 targets (Shen et al. 2025 Table 5)
Evaluation: Protenix with 5 sample(s): time per compound (Shen et al. 2025 Table 5)
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not reported by the source: The source prints no interval or spread for this value
Evidence: Author-reported evaluation · source checkedShen et al. 2025, Chemical Science (Europe PMC full text) · Table 5, row 'Protenix' (Number of samples = 5), column 'ctsk'

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Five representative targets with 400 randomly selected decoys each
Adaptation: None; default or recommended settings
Scoring implementation: Total time for a target divided by its number of compounds

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Reported result 30.01 Individual claims	Shen et al. 2025, Chemical Science (Europe PMC full text) Original source ↗ Table 5, row 'Protenix' (Number of samples = 5), column 'ctsk' Version: PMC12704515 (Chem Sci, published 2025-12-11) Retrieved: 2026-10-22T11:52:32Z	source checked ["independent-cell-check","deterministic-table-parse"] · 2026-10-22 author reported Audit details Checked against the pinned source by an automated independent re-parse. Transcription checked; not reproduced and not reviewed by a human scientist. Field: `attributes.printed_value` Source artifact SHA-256: `11a4cee97057d9e72f9393024d22fdd169e3134f493367eee2f7869facf9ccf8` Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: `11a4cee97057d9e72f9393024d22fdd169e3134f493367eee2f7869facf9ccf8` Extraction artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

Shen et al. 2025, Chemical Science (Europe PMC full text) · Original source · PMC12704515 (Chem Sci, published 2025-12-11)

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Technical metadata and extraction receipts

Stable ID: hitdisc-20261022-result-speed-speed-protenix-5-ctsk

metric: runtime
metric direction: lower
unit: second
metric qualifier: Average total time per compound on one NVIDIA H100 80 GB, DEKOIS 2.0 target ctsk
printed value: 30.01
numeric value: 30.01
source locator: Table 5, row 'Protenix' (Number of samples = 5), column 'ctsk'
missing metadata: uncertainty: reason: unreported; note: The source prints no interval or spread for this value
review: method: independent-cell-check; deterministic-table-parse; reviewer: claude; reviewer note: Claude review agent, independent of the extraction agent; no human review claimed; date: 2026-10-22; method note: Re-downloaded the pinned Europe PMC XML, matched its SHA-256, and re-parsed Tables 1 to 5 with a parser written for this review (myparse_shen.py), independent of the extractor's build_batch.py. Every printed value, row label and column header compared; the parser was proved on six seeded errors.; note: Checked against the pinned source by an automated independent re-parse. Transcription checked; not reproduced and not reviewed by a human scientist.; artifact sha256: 11a4cee97057d9e72f9393024d22fdd169e3134f493367eee2f7869facf9ccf8; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12704515/fullTextXML; receipt: data/omics/use-case-coverage-hitdisc-20261022/review.json
source table: Table 5
unit detail: seconds per compound
hardware: One NVIDIA H100 with 80 GB of memory

Related records

evaluation: Protenix with 5 sample(s): time per compound (Shen et al. 2025 Table 5)

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