Runtime (Evaluation on the eQTL test split after 5-epoch fine-tuning) of NT 500M human reference, fine-tuned 5 epochs, unpruned (Hegde et al. 2025) on Enformer eQTL causal-variant dataset, Genomics Long-Range Benchmark version (Hegde et al. 2025)
8.49 Runtime (Evaluation on the eQTL test split after 5-epoch fine-tuning)
Methods
- Tested configuration
- NT 500M human reference, fine-tuned 5 epochs, unpruned (Hegde et al. 2025)
- Protocol
- Fine-tuning and evaluation wall time, 5 epochs on the Enformer eQTL dataset (Hegde et al. 2025 Table A1)
- Dataset
- Enformer eQTL causal-variant dataset, Genomics Long-Range Benchmark version (Hegde et al. 2025)
- Procedure
- Fine-tuning and evaluation wall time, 5 epochs on the Enformer eQTL dataset (Hegde et al. 2025 Table A1)
- Evaluation
- NT 500M human reference, 5-epoch fine-tuning time (Hegde et al. 2025 Table A1)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Independent external evaluation · source checkedReaping the Fruits of LLM Pruning: Towards Small Language Models for Efficient Non-Coding Variant Effect Prediction · Table A1, row seed 43, column 'Evaluation Time (Minutes)'
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Benchmark train split for fine-tuning; evaluation split for evaluation
- Adaptation
- LoRA parameter-efficient fine-tuning (peft; r=1, lora_alpha=32, lora_dropout=0.1)
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 8.49 Individual claims | Reaping the Fruits of LLM Pruning: Towards Small Language Models for Efficient Non-Coding Variant Effect Prediction Table A1, row seed 43, column 'Evaluation Time (Minutes)' Version: Genes 16(11):1358, 2025; PMC12652071 full-text XML | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-14 independent paper Audit detailsValue matches. Hardware is from the Methods (2 × TITAN Xp for the Nucleotide Transformer); Table A1 names none. Review corrected the configuration's fine-tuning description from full fine-tuning to LoRA (Appendix A.3). Transcribed, not reproduced. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Reaping the Fruits of LLM Pruning: Towards Small Language Models for Efficient Non-Coding Variant Effect Prediction · Original source · Genes 16(11):1358, 2025; PMC12652071 full-text XML
Technical metadata and extraction receipts
Stable ID: gfm-guide-20261014-result-hegde-nt-5-epochs-evaluation-time-seed-43
- metric
- runtime
- metric direction
- lower
- unit
- minute
- printed value
- 8.49
- numeric value
- 8.49
- source locator
- Table A1, row seed 43, column 'Evaluation Time (Minutes)'
- missing metadata
- uncertainty: reason: unreported
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; method note: Table A1 (table-wrap genes-16-01358-t0A1) parsed with ElementTree by the reviewer's script (review/check_gfm_guide.py); header and seed row asserted; XML SHA-256 matches.; reviewer: claude; reviewer note: Independent Claude (Opus 5.5) review agent for PR #150; did not extract this batch; no human review claimed; date: 2026-10-14; artifact sha256: 9ea68b688637b40f0aeced7c905822f6b14c352a3a935c61c407945f3d66ef47; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12652071/fullTextXML; note: Value matches. Hardware is from the Methods (2 × TITAN Xp for the Nucleotide Transformer); Table A1 names none. Review corrected the configuration's fine-tuning description from full fine-tuning to LoRA (Appendix A.3). Transcribed, not reproduced.
- metric qualifier
- Evaluation on the eQTL test split after 5-epoch fine-tuning
- seed
- 43
- hardware
- 2 × NVIDIA TITAN Xp (Methods)