Result

Designability of Protpardelle-1c (cc58) on 500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)

1 Designability

Methods

Tested configuration: Protpardelle-1c (cc58)
Protocol: Genie 3 short monomer generation designability: Unconditional short monomer Designability
Dataset subset: 500 generated monomers per run; lengths 50–250 in steps of 50; three runs (Genie 3 short monomer generation split)
Procedure: Unconditional short monomer generation: 100 structures at each length 50, 100, 150, 200 and 250 (500 samples per run); 3 repeated runs; Table 3 reports the authors’ average across runs. Designability uses minimum C-alpha scRMSD <2 angstrom across 8 ProteinMPNN sequences refolded with ESMFold. Diversity and novelty use FoldSeek release 10 (2025-01-19); exact definitions and reference sets in Appendix B.1. Method-specific checkpoints and sampling settings remain as Appendix B.2.
Evaluation: Protpardelle-1c (cc58) on Genie 3 short monomer generation designability: Unconditional short monomer Designability
Coverage: 500 generated per run, 3 repeats (Three repeated runs; metric-specific valid subsets not assigned a pooled denominator.)
Uncertainty: Not yet extracted
Evidence: Author-reported evaluation · source checkedGenie 3 primary paper v1, Table 3 · PDF page 20, Appendix B.3, Table 3, data row 9 (Protpardelle-1c (cc58)), column Designability

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Designability

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Reported result 1.00 Individual claims	Genie 3 primary paper v1, Table 3 Original source ↗ PDF page 20, Appendix B.3, Table 3, data row 9 (Protpardelle-1c (cc58)), column Designability Version: 10.64898/2026.05.01.722168v1; posted 2026-05-05 Retrieved: 2026-09-23T11:22:04.377971+00:00	source checked ["transcription","rendered-source-visual-check"] · 2026-09-23 author reported Audit details Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: `attributes.printed_value` Source artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089` Extraction artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

1 source record and release history

Genie 3 primary paper v1, Table 3 · Original source · 10.64898/2026.05.01.722168v1; posted 2026-05-05

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Technical metadata and extraction receipts

Stable ID: genie3-2026-table3-result-protpardelle-1c-cc58-designability-designability

areas: proteins-complexes
tasks: Unconditional short monomer Designability
metric: designability
metric direction: higher
unit: unitless
printed value: 1.00
numeric value: 1.00
source locator: PDF page 20, Appendix B.3, Table 3, data row 9 (Protpardelle-1c (cc58)), column Designability
missing metadata: denominator: reason: unextracted; seeds: reason: unreported; uncertainty: reason: unextracted
review: method: transcription; rendered-source-visual-check; reviewer: codex; date: 2026-09-23; artifact sha256: 43de8eab49ac74ad9141fbe955703a4e5f7879e0a83cbb547de37fc4e1d3e089; retrieval url: https://www.biorxiv.org/content/10.64898/2026.05.01.722168v1.full.pdf; method note: exact-string transcription of complete Table 3; checked against rendered primary PDF; no graph digitization or recomputation; reviewer note: role: automated source review; note: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
aggregation: Mean over three repeated runs
coverage: generated per run: 500; repeats: 3; note: Three repeated runs; metric-specific valid subsets not assigned a pooled denominator.
unit detail: reported score

Related records

evaluation: Protpardelle-1c (cc58) on Genie 3 short monomer generation designability: Unconditional short monomer Designability

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