0.605 pathogenic/common SNP Cohen's d
Sei, output tracks* pathogenic/common SNP Cohen's d
- Tested configuration
- Sei, output tracks* (pathogenic/common SNP classification)
- Protocol
- Feng pathogenic-versus-common SNP classification
- Dataset
- Feng pathogenic/common SNP short-window dataset
- Procedure
- Table 5, frozen embeddings + random forest classifier
- Evaluation
- Sei, output tracks* pathogenic/common SNP evaluation
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Independent external evaluation · source checkedBenchmarking DNA foundation models for genomic and genetic tasks · Table 5, Sei, output tracks* row, Cohen's d column (deterministic XML extraction). Signed effect size; the source does not state a universal desirable sign/direction, so direction is recorded as unknown rather than assumed higher-is-better.
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- Three disjoint outer chromosome test groups (3/6/9/12/16/18/19/21; 2/5/11/14/17/20/22/X; 1/4/7/8/10/13/15), each held out in turn with fourfold inner-chromosome cross-validation for hyperparameter tuning.
- Adaptation
- Frozen pretrained representation plus a supervised random-forest classifier head fitted for this task
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.6046 Individual claims | Benchmarking DNA foundation models for genomic and genetic tasks Table 5, Sei, output tracks* row, Cohen's d column (deterministic XML extraction). Signed effect size; the source does not state a universal desirable sign/direction, so direction is recorded as unknown rather than assumed higher-is-better. Version: PMC12663285.1 | source checked automated source review · 2026-10-07T13:38:59Z independent paper Audit detailsBounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
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Release 2026-10-07-1448159e6a81 · Record review: source checked
1 source records and release history
Download this releaseTechnical metadata and extraction receipts
Stable ID: amp-feng-20261007-result-variant-sei-output-tracks-cohend
- metric
- pathogenic/common SNP Cohen's d
- metric direction
- unknown
- missing metadata
- None recorded
- numeric value
- 0.6046
- printed value
- 0.6046
- review
- method: automated_source_review; notes: Bounded transcription of a Codex-checked primary-source cell. No independent experimental reproduction or qualified human scientific review.; reviewed at: 2026-10-07T13:38:59Z; reviewer: Claude Sonnet AMP-integration worker, bounded transcription of Codex-checked primary values (workbench/amp-supervision/primary-review.md, integration-review-corrections.md); pending qualified human scientific review
- source locator
- Table 5, Sei, output tracks* row, Cohen's d column (deterministic XML extraction). Signed effect size; the source does not state a universal desirable sign/direction, so direction is recorded as unknown rather than assumed higher-is-better.
- uncertainty
- Not reported
- unit
- Cohen's d