Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Protocol
Human RNA 2OMe sites, independent test set (human RNA 2-prime-O-methylation site prediction)
Human RNA 2OMe sites, independent test set · ACC. 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.
Sources
2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACCOverview
Key specifications have not been extracted for this record. See the linked evaluation and sources for the reported setup.
limited source coverage · Automated source review, 2026-09-17. All specifications and missing details
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
Human RNA 2OMe sites, independent test set · ACC
ACC (fraction) · Higher values are better.
Human RNA 2OMe sites, independent test set (human RNA 2-prime-O-methylation site prediction) · Human RNA 2OMe sites, independent test set
Evidence origin: Independent external evaluation, Author-reported evaluation.
2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC- Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.
Comparison details and limitations
41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.
Automated source review: 2026-09-17. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
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Methods and evaluation design
Procedure, tasks and evaluated configurations
How it works
Evaluation in this paper
41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.
Sources
2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACCEvaluation design
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Recorded evaluations
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Baseline coverage
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0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
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Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
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This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
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Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-29-06401fd5b220. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
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Strengths, limitations and unresolved questions
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-protocol-d933438afda70a21efSpecifications
Inputs, training, access and other details
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Splits | Not extracted or verified for this record. |
| Allowed inputs | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Metrics | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Papers and result coverage
Last literature check: 2026-09-17. Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
| Paper or primary resource | Version | Reference |
|---|---|---|
| 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model | journal full text in PMC | Read source DOI: 10.1093/bioinformatics/btaf417 |
Historical gaps recorded on 2026-09-17
The catalogue now holds 35 result rows for this benchmark. A note below about pending extraction describes the state on 2026-09-17 and may since have been answered by a later batch. The result rows and their sources are the current record.
- exact checkpoint hashes and per-method scored denominators: Table labels alone do not establish these fields; do not infer checkpoint or scored count from model name or dataset size.
Search and extraction details
complete tables extracted
Searches
- 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model 10.1093/bioinformatics/btaf417
Evidence locations
- Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set. Individual claims | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC Version: journal full text in PMC | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Introduction Human RNA 2OMe sites, independent test set · ACC. 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set. Individual claims | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC Version: journal full text in PMC | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: evaluates task reported-task-82fc7843f07324 Individual claims | 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC Version: journal full text in PMC | source checked automated source review · 2026-09-17 Audit detailsField: Claim: paper-claim-49edd508eb9e7f56c9 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: needs review
1 source records and release history
- 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: paper-protocol-d933438afda70a21ef
- areas
- rna-transcriptomes
- tasks
- human RNA 2-prime-O-methylation site prediction
- entity level
- protocol
- protocol
- 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.
- comparison panels
- id: 2ome-lm-2025-btaf417-t2-accuracy; title: Human RNA 2OMe sites, independent test set · ACC; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: ACC; unit: fraction; direction: higher; result ids: paper-result-6cd0c965571a51b666; paper-result-0a3793081d7daa05a3; paper-result-90076f457aae558dd0; paper-result-6f26b2a32012628065; paper-result-172c48ff6795f50b97; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-F1; title: Human RNA 2OMe sites, independent test set · F1-score; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: F1-score; unit: fraction; direction: higher; result ids: paper-result-2901879d63427fece0; paper-result-703d9f2e0a92c08138; paper-result-1f1eb13ac1d3b0659c; paper-result-d219017e57658f8194; paper-result-a6ed9c1d07e0a8e3ac; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 3: Human RNA 2OMe sites, independent test set F1-score; Table 2. (btaf417-T2), row 3 BERT2OME, column 3: Human RNA 2OMe sites, independent test set F1-score; Table 2. (btaf417-T2), row 4 H2Opred, column 3: Human RNA 2OMe sites, independent test set F1-score; Table 2. (btaf417-T2), row 5 Meta-2OM, column 3: Human RNA 2OMe sites, independent test set F1-score; Table 2. (btaf417-T2), row 6 2OMe-LM, column 3: Human RNA 2OMe sites, independent test set F1-score; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-precision; title: Human RNA 2OMe sites, independent test set · Precision; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: Precision; unit: fraction; direction: higher; result ids: paper-result-657a6c49b38ef8252b; paper-result-6489236abf51572541; paper-result-a070ec6c349b5e96ef; paper-result-2d7677257f873b4e29; paper-result-b90e8cd12cecf6951f; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 4: Human RNA 2OMe sites, independent test set Precision; Table 2. (btaf417-T2), row 3 BERT2OME, column 4: Human RNA 2OMe sites, independent test set Precision; Table 2. (btaf417-T2), row 4 H2Opred, column 4: Human RNA 2OMe sites, independent test set Precision; Table 2. (btaf417-T2), row 5 Meta-2OM, column 4: Human RNA 2OMe sites, independent test set Precision; Table 2. (btaf417-T2), row 6 2OMe-LM, column 4: Human RNA 2OMe sites, independent test set Precision; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-recall; title: Human RNA 2OMe sites, independent test set · Recall; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: Recall; unit: fraction; direction: higher; result ids: paper-result-eb25b223c10be4f330; paper-result-c8c5c199a2b0059317; paper-result-fab2a73ce6d700ff87; paper-result-7c85e27954addc7e14; paper-result-9980f6cb88d2219b02; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 5: Human RNA 2OMe sites, independent test set Recall; Table 2. (btaf417-T2), row 3 BERT2OME, column 5: Human RNA 2OMe sites, independent test set Recall; Table 2. (btaf417-T2), row 4 H2Opred, column 5: Human RNA 2OMe sites, independent test set Recall; Table 2. (btaf417-T2), row 5 Meta-2OM, column 5: Human RNA 2OMe sites, independent test set Recall; Table 2. (btaf417-T2), row 6 2OMe-LM, column 5: Human RNA 2OMe sites, independent test set Recall; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-AUROC; title: Human RNA 2OMe sites, independent test set · AUC; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: AUC; unit: fraction; direction: higher; result ids: paper-result-48c539e46e8e0de49c; paper-result-c5e158015fb2c59552; paper-result-da8a9134bd3530143b; paper-result-ce07a0b8b72a4068f5; paper-result-76e7297a1974a4704a; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 6: Human RNA 2OMe sites, independent test set AUC; Table 2. (btaf417-T2), row 3 BERT2OME, column 6: Human RNA 2OMe sites, independent test set AUC; Table 2. (btaf417-T2), row 4 H2Opred, column 6: Human RNA 2OMe sites, independent test set AUC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 6: Human RNA 2OMe sites, independent test set AUC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 6: Human RNA 2OMe sites, independent test set AUC; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-AUPRC; title: Human RNA 2OMe sites, independent test set · AUPR; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: AUPR; unit: fraction; direction: higher; result ids: paper-result-cf762cdb6f3083c1e5; paper-result-ea74464791a87509df; paper-result-79788c7d80922dad49; paper-result-209a40abae677db031; paper-result-13e1c3729d85f66b41; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 7: Human RNA 2OMe sites, independent test set AUPR; Table 2. (btaf417-T2), row 3 BERT2OME, column 7: Human RNA 2OMe sites, independent test set AUPR; Table 2. (btaf417-T2), row 4 H2Opred, column 7: Human RNA 2OMe sites, independent test set AUPR; Table 2. (btaf417-T2), row 5 Meta-2OM, column 7: Human RNA 2OMe sites, independent test set AUPR; Table 2. (btaf417-T2), row 6 2OMe-LM, column 7: Human RNA 2OMe sites, independent test set AUPR; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17; id: 2ome-lm-2025-btaf417-t2-MCC; title: Human RNA 2OMe sites, independent test set · MCC; protocol id: paper-protocol-d933438afda70a21ef; dataset id: paper-dataset-64b51e2f952f2c1c09; metric: MCC; unit: unitless; direction: higher; result ids: paper-result-acad7ffaf81174cddb; paper-result-d947e45a8a87762a5f; paper-result-abe41dfecafe879c49; paper-result-85be9319f746a0dd77; paper-result-e68cc241f300063bca; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 8: Human RNA 2OMe sites, independent test set MCC; Table 2. (btaf417-T2), row 3 BERT2OME, column 8: Human RNA 2OMe sites, independent test set MCC; Table 2. (btaf417-T2), row 4 H2Opred, column 8: Human RNA 2OMe sites, independent test set MCC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 8: Human RNA 2OMe sites, independent test set MCC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 8: Human RNA 2OMe sites, independent test set MCC; context: 41-nt centred RNA windows; balanced 8,037 positive and 8,037 negative samples after 80% identity filtering, then 8:2 train/test division. Held-out independent test set.; caveats: Do not pool cross-validation and independent-test scores. The 8:2 ratio is not converted into an exact test count. Training-data overlap for pre-existing predictors is not established by this table. Origins are labelled per method; appearance in one table does not constitute independent replication of every model.; review: method: automated_source_review; date: 2026-09-17
- benchmark research
- review date: 2026-09-17; status: complete_tables_extracted; primary sources: 2ome-lm-2025; inspected locators: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC; searched queries: 2OMe-LM: predicting 2′-O-methylation sites in human RNA using a pre-trained RNA language model 10.1093/bioinformatics/btaf417; gaps: exact checkpoint hashes and per-method scored denominators: Table labels alone do not establish these fields; do not infer checkpoint or scored count from model name or dataset size.; claim scope: Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
- legacy kinds
- benchmark
- entity classification
- review date: 2026-09-17; rationale: The source-backed record identifies a specified evaluated procedure and its dataset/split/scoring context. Classify it as a protocol while preserving version and comparison restrictions.; source ids: 2ome-lm-2025; source locator: Performance comparison of 2OMe-LM with existing predictors on the independent test set. a; Table 2. (btaf417-T2), row 2 NmRF, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 3 BERT2OME, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 4 H2Opred, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 5 Meta-2OM, column 2: Human RNA 2OMe sites, independent test set ACC; Table 2. (btaf417-T2), row 6 2OMe-LM, column 2: Human RNA 2OMe sites, independent test set ACC; ambiguities: None recorded
Related records
- evaluates task: human RNA 2-prime-O-methylation site prediction
- subject: Human RNA 2OMe sites, independent test set (human RNA 2-prime-O-methylation site prediction): links:evaluates_task:reported-task-82fc7843f07324
- benchmark: NmRF: Human RNA 2OMe sites, independent test set
- benchmark: Meta-2OM: Human RNA 2OMe sites, independent test set
- benchmark: 2OMe-LM: Human RNA 2OMe sites, independent test set
- benchmark: H2Opred: Human RNA 2OMe sites, independent test set
- benchmark: BERT2OME: Human RNA 2OMe sites, independent test set