DeepProtein beta-lactamase (PEER): MAE ↓
beta-lactamase activity regression, as distributed with PEER. Scored by mean absolute error.
Overview
An explanatory profile has not yet been reviewed for this record.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
17 recorded evaluations, 17 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.
Results
Results are available, but no reviewed comparison panel is linked in this release.
All evaluations
17 evaluations · 17 results. Different protocols are not a single leaderboard.
Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ · Dataset: beta-lactamase (PEER)
Sorted by MAE (mean absolute error) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 17 result rows with coverage, uncertainty and sources
Filter evaluations
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: AttentiveFP (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.262 ± 0.007 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.007 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAttentiveFP on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'AttentiveFP', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: ChemLLM-7B (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 112 MAE (mean absolute error) unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceChemLLM-7B on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'ChemLLM-7B', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: CNN (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.152 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCNN on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'CNN', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: CNN-RNN (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.157 ± 0.002 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.002 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCNN-RNN on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'CNN-RNN', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: Deep Prot-T5 (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.084** MAE (mean absolute error) unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceDeep Prot-T5 on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'Deep Prot-T5', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: ESM-1b (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.171 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-1b on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'ESM-1b', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: ESM-2-650M (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.154 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceESM-2-650M on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'ESM-2-650M', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: GAT (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.264 ± 0.002 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.002 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGAT on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'GAT', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: GCN (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.225 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGCN on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'GCN', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: Graphormer (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.287 ± 0.007 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.007 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGraphormer on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'Graphormer', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: LlaSMol-Mistral-7B (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.268 MAE (mean absolute error) unit-unreported · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceLlaSMol-Mistral-7B on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'LlaSMol-Mistral-7B', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: MPNN (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.262 ± 0.003 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.003 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceMPNN on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'MPNN', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: NeuralFP (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.263 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNeuralFP on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'NeuralFP', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: PAGTN (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.255 ± 0.007 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.007 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePAGTN on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'PAGTN', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: Prot-T5-XL (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.136 ± 0.003 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.003 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProt-T5-XL on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'Prot-T5-XL', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: ProtBert (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.207 ± 0.001 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.001 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProtBert on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'ProtBert', column group 'β-lactamase', column 'MAE ↓' |
| Configuration: Transformer (DeepProtein benchmark) | Protocol: DeepProtein beta-lactamase (PEER): MAE ↓ Dataset: beta-lactamase (PEER) | 0.232 ± 0.007 MAE (mean absolute error) unit-unreported · lower Uncertainty: SD 0.007 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransformer on DeepProtein beta-lactamase (PEER) (MAE ↓) lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae Aggregation: Not reported DeepProtein: deep learning library and benchmark for protein sequence learning · Table 2. row 'Transformer', column group 'β-lactamase', column 'MAE ↓' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AttentiveFP on DeepProtein beta-lactamase (PEER) (MAE ↓)
- ChemLLM-7B on DeepProtein beta-lactamase (PEER) (MAE ↓)
- CNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- CNN-RNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- Deep Prot-T5 on DeepProtein beta-lactamase (PEER) (MAE ↓)
- ESM-1b on DeepProtein beta-lactamase (PEER) (MAE ↓)
- ESM-2-650M on DeepProtein beta-lactamase (PEER) (MAE ↓)
- GAT on DeepProtein beta-lactamase (PEER) (MAE ↓)
- GCN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- Graphormer on DeepProtein beta-lactamase (PEER) (MAE ↓)
- LlaSMol-Mistral-7B on DeepProtein beta-lactamase (PEER) (MAE ↓)
- MPNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.
- Author-reported evaluations
- 17
Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
Proposed control: requires review
Training-set mean where supervised fitting is permitted
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
Proposed control: requires review
Simple features with train-only ridge regression
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Protocol coverage CSV (gzip) · Model evaluation matrix (gzip) · Source table (gzip) · Release and checksums (gzip)
Coverage is derived from release 2026-10-22-1b7cf027e4f6. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
0 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|
No evidence rows match these filters. Choose another scope or clear the search.
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- DeepProtein: deep learning library and benchmark for protein sequence learning · Original source · Version of record, Bioinformatics 2025 (PMC12553333 JATS full text)
Technical metadata and extraction receipts
Stable ID: lit-protein-20261011-deepprotein-protocol-beta-lactamase-mae
- areas
- protein-function
- contexts
- research
- protocol
- Train on the task's training split and score beta-lactamase (PEER) on its test split; five random seeds per method, mean and standard deviation reported.
- metric
- mean-absolute-error
- metric direction
- lower
- unit
- unit-unreported
- metric qualifier
- mean absolute error
- version
- As published 2025
- source locator
- beta-lactamase (PEER): column 'MAE ↓' of its table in Tables 2 to 8
- replicates
- Five random seeds (table footnote a: 'we used five different random seeds to perform independent runs, reporting the average results along with their standard deviations')
- limitations
- Author-reported results: the DeepProtein authors ran every method.
- unit detail
- error in the task's own measurement units
- dataset
- beta-lactamase (PEER); train/valid/test 4158/520/520
Related records
- part of: DeepProtein benchmark
- uses data: beta-lactamase (PEER)
- assessment: AttentiveFP on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: ChemLLM-7B on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: CNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: CNN-RNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: Deep Prot-T5 on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: ESM-1b on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: ESM-2-650M on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: GAT on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: GCN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: Graphormer on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: LlaSMol-Mistral-7B on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: MPNN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: NeuralFP on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: PAGTN on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: Prot-T5-XL on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: ProtBert on DeepProtein beta-lactamase (PEER) (MAE ↓)
- assessment: Transformer on DeepProtein beta-lactamase (PEER) (MAE ↓)