rewirebio.iobenchmarks
Protocol

CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)

Count the compounds each CACHE #3 workflow selected for synthesis and the confirmed hits among them, and score those hits for activity and chemical novelty.

23 evaluations · 161 results

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

23 recorded evaluations, 161 metric rows. A comparison chart has not yet been validated for these results. The table retains the individual findings and their sources.

View coverage and remaining gaps across all benchmarks

Results

Results are available, but no reviewed comparison panel is linked in this release.

All evaluations

23 evaluations · 161 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
61 Count (Compounds the workflow selected that were synthesised and experimentally tested)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column D ('Compounds tested')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Experimentally confirmed hits among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column E ('Hits')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Confirmed hits the Hit Evaluation Committee judged chemically novel, among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column F ('Chemically Novel Hits')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column G ('Score of best hit')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Sum of the activity scores of all the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column H ('Aggregated score')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge novelty score (Highest chemical novelty score among the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column I ('Top novelty score')
Configuration: CACHE #3 workflow WF1687Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit that was judged chemically novel)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1687: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1687, column J ('Top score of novel hits')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
89 Count (Compounds the workflow selected that were synthesised and experimentally tested)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column D ('Compounds tested')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Experimentally confirmed hits among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column E ('Hits')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Confirmed hits the Hit Evaluation Committee judged chemically novel, among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column F ('Chemically Novel Hits')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column G ('Score of best hit')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Sum of the activity scores of all the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column H ('Aggregated score')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge novelty score (Highest chemical novelty score among the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column I ('Top novelty score')
Configuration: CACHE #3 workflow WF1689Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit that was judged chemically novel)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1689: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1689, column J ('Top score of novel hits')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
82 Count (Compounds the workflow selected that were synthesised and experimentally tested)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column D ('Compounds tested')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
6 Count (Experimentally confirmed hits among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column E ('Hits')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Confirmed hits the Hit Evaluation Committee judged chemically novel, among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column F ('Chemically Novel Hits')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
23 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column G ('Score of best hit')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
126 Cache challenge activity score (Sum of the activity scores of all the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column H ('Aggregated score')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
1 Cache challenge novelty score (Highest chemical novelty score among the workflow's confirmed Round 1 hits)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column I ('Top novelty score')
Configuration: CACHE #3 workflow WF1690Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit that was judged chemically novel)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1690: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1690, column J ('Top score of novel hits')
Configuration: CACHE #3 workflow WF1691Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
71 Count (Compounds the workflow selected that were synthesised and experimentally tested)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1691: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1691, column D ('Compounds tested')
Configuration: CACHE #3 workflow WF1691Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Experimentally confirmed hits among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1691: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1691, column E ('Hits')
Configuration: CACHE #3 workflow WF1691Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Count (Confirmed hits the Hit Evaluation Committee judged chemically novel, among the compounds the workflow selected)
count · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1691: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1691, column F ('Chemically Novel Hits')
Configuration: CACHE #3 workflow WF1691Protocol: CACHE #3 Round 1 own-selection outcome per workflow (Herasymenko et al. 2026 Table S8)
Dataset: CACHE #3 Round 1 compound library
0 Cache challenge activity score (Activity score of the workflow's best confirmed Round 1 hit)
unitless · higher

Uncertainty: Not reported by the source: The source prints no interval or spread for this value

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

CACHE #3 workflow WF1691: own selection outcome

hitdisc-20261022-protocol-cache3-own-selection

Aggregation: Not reported

Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx · Sheet 'S8', row with Workflow = 1691, column G ('Score of best hit')

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Methods and evaluation design

Procedure, tasks and evaluated configurations

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Baseline coverage

Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.

0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.

No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.

Author-reported evaluations
23

Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.

Null control

Proposed control: requires review

Select a task-valid null control after reviewing inputs and metric

Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.

This is a suggested selection rule, not a validated method or a measured score.

Conventional reference

Proposed control: requires review

Select an upstream conventional reference after reviewing the full protocol

Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.

This is a suggested selection rule, not a validated method or a measured score.

Protocol coverage CSV (gzip) · Model evaluation matrix (gzip) · Source table (gzip) · Release and checksums (gzip)

Coverage is derived from release 2026-10-22-1b7cf027e4f6. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.

Run instructions

No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

Strengths, limitations and unresolved questions

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Limitations
7 values
  • Each workflow selected its own compounds, so the workflows are not compared on a common library in this arm. The merged-library arm is the comparison on one library.
  • No hit rate is printed for this arm. Compounds tested (column D) and Hits (column E) are printed as separate counts and this batch records both without dividing them, because a derived rate would be a computation rather than a printed value. The article does publish a per-workflow rate, but for the merged-library arm: columns R, S and T of sheet S8 are stored as the formulas 1000*N/L, 1000*O/L and R+S, that is confirmed Tier 1 or Tier 2 hits per 1000 compounds predicted active.
  • Workflow numbers of compounds tested range from 41 to 99, so the counts rest on small and unequal denominators.
  • The activity and novelty scores are committee judgements, not measurements, and the per-compound scoring matrix (sheet S7) was not extracted.
  • Participants are named for only 10 of the 23 workflows in this sheet; the rest are anonymous.
  • Twelve of the 23 workflows returned no confirmed hit, and the workbook stores 0 for their score of best hit, aggregated score, top novelty score and top score of novel hits. A 0 in those columns means there was no hit to score, not a hit scored at zero; each affected result carries that warning.
  • The article is internally inconsistent about Figure 6. The Results section 'Trends and Strategies from the Best Performing Computational Workflows' calls panels a, b and c 'top scoring compounds, top hit rates, and top selections from the merged Round 1 library', while the Figure 6 caption calls panel b 'the aggregated score of all Round 1 hits' and panel c the normalised Tier 1 and Tier 2 counts. The body text therefore calls an aggregated score a hit rate. No value in this batch is taken from Figure 6; every value is from sheet S8.
Individual claims
Herasymenko et al. 2026, J Chem Inf Model (CACHE Challenge #3, Europe PMC full text)

Original source ↗

Sheet 'S8' columns D, E, R, S and T and their stored formulas

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: PMC12892310 (J Chem Inf Model, published 2026-01-21)
Retrieved: 2026-10-22T11:52:32Z

conflicting claim

["scope-review","independent-cell-check"] · 2026-10-22

Audit details

Correction found by the independent review pass of batch use-case-coverage-hitdisc-20261022. The previous value is kept here.

Conflicting source claim: "[\"Each workflow selected its own compounds, so the workflows are not compared on a common library in this arm. The merged-library arm is the comparison on one library.\", \"No hit rate is printed for this arm. Compounds tested (column D) and Hits (column E) are printed as separate counts and this batch records both without dividing them, because a derived rate would be a computation rather than a printed value. The article does publish a per-workflow rate, but for the merged-library arm: columns R, S and T of sheet S8 are stored as the formulas 1000*N/L, 1000*O/L and R+S, that is confirmed Tier 1 or Tier 2 hits per 1000 compounds predicted active.\", \"Workflow numbers of compounds tested range from 41 to 99, so the counts rest on small and unequal denominators.\", \"The activity and novelty scores are committee judgements, not measurements, and the per-compound scoring matrix (sheet S7) was not extracted.\", \"Participants are named for only 10 of the 23 workflows in this sheet; the rest are anonymous.\", \"Twelve of the 23 workflows returned no confirmed hit, and the workbook stores 0 for their score of best hit, aggregated score, top novelty score and top score of novel hits. A 0 in those columns means there was no hit to score, not a hit scored at zero; each affected result carries that warning.\", \"The article is internally inconsistent about Figure 6. The Results section 'Trends and Strategies from the Best Performing Computational Workflows' calls panels a, b and c 'top scoring compounds, top hit rates, and top selections from the merged Round 1 library', while the Figure 6 caption calls panel b 'the aggregated score of all Round 1 hits' and panel c the normalised Tier 1 and Tier 2 counts. The body text therefore calls an aggregated score a hit rate. No value in this batch is taken from Figure 6; every value is from sheet S8.\"]". Claim record status: source_checked.

Field: attributes.limitations

Claim: metadata-correction-403344a3423789962d3a

Source artifact SHA-256: 43b920ac9f67fac3560bcf7d24a79f76b9a0d0d962088dfe4081742ec7b9b071

Hash scope: Hash scope not separately documented; inspect source record

Limitations
7 values
  • Each workflow selected its own compounds, so the workflows are not compared on a common library in this arm. The merged-library arm is the comparison on one library.
  • No hit rate is printed for this arm. Compounds tested (column D) and Hits (column E) are printed as separate counts and this batch records both without dividing them, because a derived rate would be a computation rather than a printed value. The article does publish a per-workflow rate, but for the merged-library arm: columns R, S and T of sheet S8 are stored as the formulas 1000*N/L, 1000*O/L and R+S, that is confirmed Tier 1 or Tier 2 hits per 1000 compounds predicted active.
  • Workflow numbers of compounds tested range from 41 to 99, so the counts rest on small and unequal denominators.
  • The activity and novelty scores are committee judgements, not measurements, and the per-compound scoring matrix (sheet S7) was not extracted.
  • Participants are named for only 10 of the 23 workflows in this sheet; the rest are anonymous.
  • Twelve of the 23 workflows returned no confirmed hit, and the workbook stores 0 for their score of best hit, aggregated score, top novelty score and top score of novel hits. A 0 in those columns means there was no hit to score, not a hit scored at zero; each affected result carries that warning.
  • The article is internally inconsistent about Figure 6. The Results section 'Trends and Strategies from the Best Performing Computational Workflows' calls panels a, b and c 'top scoring compounds, top hit rates, and top selections from the merged Round 1 library', while the Figure 6 caption calls panel b 'the aggregated score of all Round 1 hits' and panel c the normalised Tier 1 and Tier 2 counts. The body text therefore calls an aggregated score a hit rate. No value in this batch is taken from Figure 6; every value is from sheet S8.
Individual claims
Herasymenko et al. 2026, CACHE Challenge #3, Supporting Information workbook ci5c02441_si_002.xlsx

Original source ↗

Sheet 'S8' columns D, E, R, S and T and their stored formulas

Shared locator for this statement’s cited sources; not a separate locator for each citation.

Version: ci5c02441_si_002.xlsx, member of the Europe PMC supplementary archive of PMC12892310
Retrieved: 2026-10-22T11:55:00Z

conflicting claim

["scope-review","independent-cell-check"] · 2026-10-22

Audit details

Correction found by the independent review pass of batch use-case-coverage-hitdisc-20261022. The previous value is kept here.

Conflicting source claim: "[\"Each workflow selected its own compounds, so the workflows are not compared on a common library in this arm. The merged-library arm is the comparison on one library.\", \"No hit rate is printed for this arm. Compounds tested (column D) and Hits (column E) are printed as separate counts and this batch records both without dividing them, because a derived rate would be a computation rather than a printed value. The article does publish a per-workflow rate, but for the merged-library arm: columns R, S and T of sheet S8 are stored as the formulas 1000*N/L, 1000*O/L and R+S, that is confirmed Tier 1 or Tier 2 hits per 1000 compounds predicted active.\", \"Workflow numbers of compounds tested range from 41 to 99, so the counts rest on small and unequal denominators.\", \"The activity and novelty scores are committee judgements, not measurements, and the per-compound scoring matrix (sheet S7) was not extracted.\", \"Participants are named for only 10 of the 23 workflows in this sheet; the rest are anonymous.\", \"Twelve of the 23 workflows returned no confirmed hit, and the workbook stores 0 for their score of best hit, aggregated score, top novelty score and top score of novel hits. A 0 in those columns means there was no hit to score, not a hit scored at zero; each affected result carries that warning.\", \"The article is internally inconsistent about Figure 6. The Results section 'Trends and Strategies from the Best Performing Computational Workflows' calls panels a, b and c 'top scoring compounds, top hit rates, and top selections from the merged Round 1 library', while the Figure 6 caption calls panel b 'the aggregated score of all Round 1 hits' and panel c the normalised Tier 1 and Tier 2 counts. The body text therefore calls an aggregated score a hit rate. No value in this batch is taken from Figure 6; every value is from sheet S8.\"]". Claim record status: source_checked.

Field: attributes.limitations

Claim: metadata-correction-403344a3423789962d3a

Source artifact SHA-256: 5e655da5728da46c6a57882c5fef0643c057536d7897d16b9c98f6d55c12f5fe

Hash scope: artifact_sha256 is the SHA-256 of the member file ci5c02441_si_002.xlsx. The Europe PMC supplementaryFiles endpoint assembles a zip per request, so the archive's own hash is not stable; the member file's bytes are. The publisher's direct supplement URL (https://pubs.acs.org/doi/suppl/10.1021/acs.jcim.5c02441/suppl_file/ci5c02441_si_002.xlsx) returned HTTP 403 on 2026-10-22.

Archive member: ci5c02441_si_002.xlsx

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: hitdisc-20261022-protocol-cache3-own-selection

areas
molecular-interactions
contexts
research
task
Protein-ligand virtual screening (library ranking)
publication status
peer_reviewed
review
method: scope-review; automated-source-review; reviewer: claude; reviewer note: Claude review agent, independent of the extraction agent; no human review claimed; date: 2026-10-22; method note: Read the record against the pinned sources and against docs/use-cases.md and docs/record-contract.md.; note: Record checked against the pinned source and the record contract. Transcription checked; not reproduced and not reviewed by a human scientist.; artifact sha256: 5e655da5728da46c6a57882c5fef0643c057536d7897d16b9c98f6d55c12f5fe; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12892310/supplementaryFiles; receipt: data/omics/use-case-coverage-hitdisc-20261022/review.json
metric
count
metric direction
higher
unit
count
unit detail
compounds
metric qualifier
compounds selected by one workflow and the confirmed hits among them
metric definition
Compounds tested is the number a workflow selected that Enamine synthesised and the organisers assayed. Hits are the experimentally confirmed actives among them. Chemically Novel Hits are those the Hit Evaluation Committee judged novel. The activity score reflects the quality and consistency of the binding signals and the chemical soundness of the molecule, including absence of undesirable groups; the novelty score runs from 0 (not novel) to 3 (unanimously voted as novel) across three independent chemists.
protocol
Blinded and prospective: each team selected up to 100 commercially available compounds before any testing. All 1739 selected compounds were screened by HTRF at 100 uM, then by a three-point dose response, then by surface plasmon resonance, and in parallel by crystal soaking.
denominator
1739
version
Herasymenko et al. 2026, Supporting Information table S8
source locator
Sheet 'S8' of ci5c02441_si_002.xlsx; scoring described in the article's Results and Figure 6 caption
limitations
Each workflow selected its own compounds, so the workflows are not compared on a common library in this arm. The merged-library arm is the comparison on one library.; No hit rate is printed for this arm. Compounds tested (column D) and Hits (column E) are printed as separate counts and this batch records both without dividing them, because a derived rate would be a computation rather than a printed value. The article does publish a per-workflow rate, but for the merged-library arm: columns R, S and T of sheet S8 are stored as the formulas 1000*N/L, 1000*O/L and R+S, that is confirmed Tier 1 or Tier 2 hits per 1000 compounds predicted active.; Workflow numbers of compounds tested range from 41 to 99, so the counts rest on small and unequal denominators.; The activity and novelty scores are committee judgements, not measurements, and the per-compound scoring matrix (sheet S7) was not extracted.; Participants are named for only 10 of the 23 workflows in this sheet; the rest are anonymous.; Twelve of the 23 workflows returned no confirmed hit, and the workbook stores 0 for their score of best hit, aggregated score, top novelty score and top score of novel hits. A 0 in those columns means there was no hit to score, not a hit scored at zero; each affected result carries that warning.; The article is internally inconsistent about Figure 6. The Results section 'Trends and Strategies from the Best Performing Computational Workflows' calls panels a, b and c 'top scoring compounds, top hit rates, and top selections from the merged Round 1 library', while the Figure 6 caption calls panel b 'the aggregated score of all Round 1 hits' and panel c the normalised Tier 1 and Tier 2 counts. The body text therefore calls an aggregated score a hit rate. No value in this batch is taken from Figure 6; every value is from sheet S8.
scope note
Prospective: predictions were submitted before any compound was synthesised or assayed.
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