Frame-aware k-mer random forest
Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
Overview
Named prediction method identified in the cited primary source. Exact fitted configurations and scores are separate records.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
6 evaluations · 6 results. Different protocols are not a single leaderboard.
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Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: 5mer_frame_forest | Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt | 0.73 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source5mer_frame_forest random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C6; row 5mer_frame_forest; S7–S8 MPRA correlation plots |
| Configuration: frame_forest (4mer) | Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt | 0.772 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceframe_forest (4mer) random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C4; row frame_forest (4mer); S7–S8 MPRA correlation plots |
| Configuration: frame_forest_hyperopt | Protocol: FramePool study MRL: Random 25-100nt Dataset subset: Sample MPRA Random 25-100nt | 0.778 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceframe_forest_hyperopt random-25-100nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell C5; row frame_forest_hyperopt; S7–S8 MPRA correlation plots |
| Configuration: 5mer_frame_forest | Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt | 0.803 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceNot reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B6; row 5mer_frame_forest; S7–S8 MPRA correlation plots |
| Configuration: frame_forest (4mer) | Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt | 0.877 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceframe_forest (4mer) random-50nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B4; row frame_forest (4mer); S7–S8 MPRA correlation plots |
| Configuration: frame_forest_hyperopt | Protocol: FramePool study MRL: Random 50nt Dataset subset: Sample MPRA Random 50nt | 0.876 pearson_r correlation · higher Uncertainty: type: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceframe_forest_hyperopt random-50nt Not reported Aggregation: Not reported FramePool 2021 primary article; FramePool Supplementary Table S4 · S4 Table cell B5; row frame_forest_hyperopt; S7–S8 MPRA correlation plots |
Source checking is not independent reproduction. Release 2026-09-30-e37e3ab1284d.
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How it works, versions and access
Versions and evaluated configurations
- 5mer_frame_forest · variant of
- frame_forest (4mer) · variant of
- frame_forest_hyperopt · variant of
Strengths, limitations and unresolved questions
Evidence
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Evidence table
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Sources and history
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Release 2026-09-30-e37e3ab1284d · Record review: source checked
2 source records and release history
- FramePool 2021 primary article · Original source · 2021 journal article XML; PMC8136849.1
- FramePool Supplementary Table S4 · Original source · 2021 published S4 XLSX
Technical metadata and extraction receipts
Stable ID: uc20260930-method-frame-aware-k-mer-random-forest
- areas
- rna-transcriptomes
- source locator
- S1/S4 Table; Methods Framepool model and Model training; S7–S8 figure captions
- review
- method: automated_source_review; reviewer: Codex experimental-use-case curation; date: 2026-09-30; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.
- entity level
- method
- identity scope
- Family/method identity only; no undocumented checkpoint equivalence.
Related records
- variant of: 5mer_frame_forest
- variant of: frame_forest (4mer)
- variant of: frame_forest_hyperopt