Method

BLASSO rhodopsin predictor

Bayesian LASSO regression that predicts a rhodopsin's absorption wavelength from predefined physicochemical features of the amino acids in its sequence, without using its three-dimensional structure.

5 evaluations · 20 results

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5 evaluations · 20 results. Different protocols are not a single leaderboard.

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BLASSO (RhoMax paper eV-trained comparator) · configuration of

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Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Description Bayesian LASSO regression that predicts a rhodopsin's absorption wavelength from predefined physicochemical features of the amino acids in its sequence, without using its three-dimensional structure. Individual claims	RhoMax 2024 primary article Original source ↗ uc20260930-source-rhomax-2024: Introduction (the approach of Inoue et al. 'utilizes the Bayesian LASSO ... based on predefined physicochemical features of amino acids. This approach does not take into account the geometric three-dimensional (3D) structure'); Comparison to Previous Methods Version: 2024 journal article; XML pinned by SHA-256 Retrieved: 2026-09-30	source checked ["automated-source-review","ai-assisted-source-review"] · 2026-10-11 Audit details Approved. Checked the 10 method and model descriptions against their sources (EVmutation, GEMME and RSALOR abstracts, the FramePool k-mer random forests, the RhoMax BLASSO text) and spot-checked the 49 mRNABench rows against Appendix A; all accurate. Licences on the 3 new sources match their Europe PMC records. At the reviewer's suggestion, the en dash printed in some checkpoint names is written as a hyphen in the descriptions. Field: `description` Claim: metadata-correction-cb3769975b7f722c1f9f Source artifact SHA-256: `93814dd95c40cb109d592c2917728dc568c0445571e08180b188e726a4bd8f19` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

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RhoMax 2024 primary article · Original source · 2024 journal article; XML pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: uc20260930-method-blasso-rhodopsin-predictor

areas: proteins-complexes
source locator: Table 1; Comparison to Previous Methods; Network Architecture
review: method: automated-source-review; reviewer: codex; reviewed at: 2026-09-30T21:40:59.576893+00:00; scope: Primary-source transcription and catalogue applicability audit; not human scientific review or independent experimental reproduction.; reviewer note: role: experimental use-case curation
entity level: method
identity scope: Family/method identity only; no undocumented checkpoint equivalence.

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subject: BLASSO rhodopsin predictor: description
configuration of: BLASSO (RhoMax paper eV-trained comparator)

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.063 ± 0.05 MAE electronvolt · lower Uncertainty: SD 0.05 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	14.90 ± 10.9 MAE nanometre · lower Uncertainty: SD 10.9 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	0.062 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row mean, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout mean Dataset subset: RhoMax mean test population	14.8 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / mean Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row mean, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.047 ± 0.04 MAE electronvolt · lower Uncertainty: SD 0.04 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	10.58 ± 8.4 MAE nanometre · lower Uncertainty: SD 8.4 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	0.047 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 1, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 1 Dataset subset: RhoMax split 1 test population	9.94 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 1 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 1, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.064 ± 0.06 MAE electronvolt · lower Uncertainty: SD 0.06 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	13.89 ± 13.0 MAE nanometre · lower Uncertainty: SD 13.0 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	0.058 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 2, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 2 Dataset subset: RhoMax split 2 test population	13.6 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 2 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 2, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	0.045 ± 0.03 MAE electronvolt · lower Uncertainty: SD 0.03 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 3, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	10.10 ± 7.0 MAE nanometre · lower Uncertainty: SD 7.0 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 3, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	0.043 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 3, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 3 Dataset subset: RhoMax split 3 test population	10.1 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 3 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 3, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	0.095 ± 0.05 MAE electronvolt · lower Uncertainty: SD 0.05 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 4, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	25.02 ± 15.1 MAE nanometre · lower Uncertainty: SD 15.1 Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 4, column mean and standard deviation blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	0.1 Median absolute error electronvolt · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, eV block, row split 4, column median blasso
Configuration: BLASSO (RhoMax paper eV-trained comparator)	Protocol: RhoMax WT-background holdout split 4 Dataset subset: RhoMax split 4 test population	25.7 Median absolute error nanometre · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source BLASSO (RhoMax paper eV-trained comparator) / split 4 Not reported Aggregation: Not reported RhoMax 2024 primary article · Table 1, nm block, row split 4, column median blasso