Evaluation

Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026)

Published comparison transcribed from the pinned source; not reproduced.

Evaluation results

1 evaluation · 6 results. Different protocols are not a single leaderboard.

Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') · Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3

Sorted by F1 (indel only, HG008 primary region) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	F1 (indel only, HG008 primary region)	False negatives (indel only, HG008 primary region)	False positives (indel only, HG008 primary region)	Precision (indel only, HG008 primary region)	Recall (indel only, HG008 primary region)	True positives (indel only, HG008 primary region)
Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)Evaluation	0.753	1942	26	0.991	0.607	2994

All 6 result rows with coverage, uncertainty and sources

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	0.753 F1 (indel only, HG008 primary region) fraction · higher Uncertainty: 95% CI 0.740977 to 0.763650. Genomic block bootstrap over 5-Mb blocks, linear percentile interval; spatial variation within the benchmark region, not between tumours Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'F1'
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	1940 False negatives (indel only, HG008 primary region) count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'FN'
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	26 False positives (indel only, HG008 primary region) count · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'FP'
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	0.991 Precision (indel only, HG008 primary region) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'Precision'
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	0.607 Recall (indel only, HG008 primary region) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'Recall'
Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)	Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL') Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3	2990 True positives (indel only, HG008 primary region) count · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Majority on HG008 primary region (nogermlineinterference), indels (Hasan 2026) somatic-hg008-20261011-protocol-primary-indel Aggregation: Not reported Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling; AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL', column 'TP'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Metrics are recomputed from the saved predictions: not yet verified
Sample annotations are recorded: not yet verified
Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
A pinned run recipe exists: not yet verified
Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

No verified artifact manifest is linked to this exact record.
File checksums match the recorded files: not yet verified
Predictions are matched to the right samples: not yet verified
Score meaning and direction are confirmed: not yet verified
Independent validation data exist: not yet verified
Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Evaluation procedure

HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL')

Configuration: Majority of Mutect2, Strelka2 and DeepSomatic (at least two callers) (Hasan 2026)
Protocol: HG008 primary region (nogermlineinterference), indels, Mutect2, Strelka2, DeepSomatic and ensembles (Hasan 2026 Table 2, Class 'INDEL')
Dataset: NIST/GIAB HG008 tumour-normal WGS (HG008-T pancreatic cancer cell line, matched normal), HG008-T draft somatic small-variant benchmark v0.3

origin: Author-reported evaluation
configuration: Primary source as retrieved 2026-10-11
protocol id: somatic-hg008-20261011-protocol-primary-indel
dataset version: HG008-T draft somatic small-variant benchmark v0.3
split: External test; procedure frozen on HCC1395 before HG008 truth access
population: One HG008 tumour-normal pair
inputs: Tumour and matched-normal WGS alignments
adaptation: Not reported
metric implementation: Exact normalised CHROM/POS/REF/ALT match of PASS calls within the region
aggregation: Single pair; 95% block-bootstrap interval on F1
budget: Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split: External test; procedure frozen on HCC1395 before HG008 truth access
Adaptation: Not reported
Scoring implementation: Exact normalised CHROM/POS/REF/ALT match of PASS calls within the region

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

36 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance
Comparison: adaptation Not reported Context-only references	Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages) Retrieved: 2026-10-11T21:39:12Z	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `358502e2394c1f90214889c40aae8b29d2836cddbcf55460688d7fda051dc1c3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: adaptation Not reported Context-only references	AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996) Retrieved: 2026-10-11T21:39:34Z	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `629921b1198f4a5290d191857d13f98e54a1d132d722caf0ac83805f7e24a40d` Hash scope: SHA-256 of the downloaded zip. Member SHA-256 values for the extracted tables: tables/Table1_HG008_primary_metrics.tsv df3ac2809164be08676c9a010d3c7324ca08998a4b3964d5fb0c7a2201445fd6; tables/Table2_HG008_variant_class_metrics.tsv 6fe473217eda2e9b87c5291d28ff6e14339107b1b88346a6f72e62473713ed4a; tables/Table4_HG008_sensitivity_all_region.tsv f838cab270034cc351c5fa0fd7442b7ca6318beca598640b988eaa3952123ef8 (each equals the archive's own SHA256SUMS entry). Inspected artifact
Comparison: aggregation Single pair; 95% block-bootstrap interval on F1 Context-only references	Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages) Retrieved: 2026-10-11T21:39:12Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `358502e2394c1f90214889c40aae8b29d2836cddbcf55460688d7fda051dc1c3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: aggregation Single pair; 95% block-bootstrap interval on F1 Context-only references	AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996) Retrieved: 2026-10-11T21:39:34Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `629921b1198f4a5290d191857d13f98e54a1d132d722caf0ac83805f7e24a40d` Hash scope: SHA-256 of the downloaded zip. Member SHA-256 values for the extracted tables: tables/Table1_HG008_primary_metrics.tsv df3ac2809164be08676c9a010d3c7324ca08998a4b3964d5fb0c7a2201445fd6; tables/Table2_HG008_variant_class_metrics.tsv 6fe473217eda2e9b87c5291d28ff6e14339107b1b88346a6f72e62473713ed4a; tables/Table4_HG008_sensitivity_all_region.tsv f838cab270034cc351c5fa0fd7442b7ca6318beca598640b988eaa3952123ef8 (each equals the archive's own SHA256SUMS entry). Inspected artifact
Comparison: budget Not reported Context-only references	Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages) Retrieved: 2026-10-11T21:39:12Z	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `358502e2394c1f90214889c40aae8b29d2836cddbcf55460688d7fda051dc1c3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: budget Not reported Context-only references	AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996) Retrieved: 2026-10-11T21:39:34Z	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `629921b1198f4a5290d191857d13f98e54a1d132d722caf0ac83805f7e24a40d` Hash scope: SHA-256 of the downloaded zip. Member SHA-256 values for the extracted tables: tables/Table1_HG008_primary_metrics.tsv df3ac2809164be08676c9a010d3c7324ca08998a4b3964d5fb0c7a2201445fd6; tables/Table2_HG008_variant_class_metrics.tsv 6fe473217eda2e9b87c5291d28ff6e14339107b1b88346a6f72e62473713ed4a; tables/Table4_HG008_sensitivity_all_region.tsv f838cab270034cc351c5fa0fd7442b7ca6318beca598640b988eaa3952123ef8 (each equals the archive's own SHA256SUMS entry). Inspected artifact
Comparison: dataset version HG008-T draft somatic small-variant benchmark v0.3 Context-only references	Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages) Retrieved: 2026-10-11T21:39:12Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `358502e2394c1f90214889c40aae8b29d2836cddbcf55460688d7fda051dc1c3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: dataset version HG008-T draft somatic small-variant benchmark v0.3 Context-only references	AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996) Retrieved: 2026-10-11T21:39:34Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `629921b1198f4a5290d191857d13f98e54a1d132d722caf0ac83805f7e24a40d` Hash scope: SHA-256 of the downloaded zip. Member SHA-256 values for the extracted tables: tables/Table1_HG008_primary_metrics.tsv df3ac2809164be08676c9a010d3c7324ca08998a4b3964d5fb0c7a2201445fd6; tables/Table2_HG008_variant_class_metrics.tsv 6fe473217eda2e9b87c5291d28ff6e14339107b1b88346a6f72e62473713ed4a; tables/Table4_HG008_sensitivity_all_region.tsv f838cab270034cc351c5fa0fd7442b7ca6318beca598640b988eaa3952123ef8 (each equals the archive's own SHA256SUMS entry). Inspected artifact
Comparison: inputs Tumour and matched-normal WGS alignments Context-only references	Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages) Retrieved: 2026-10-11T21:39:12Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `358502e2394c1f90214889c40aae8b29d2836cddbcf55460688d7fda051dc1c3` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
Comparison: inputs Tumour and matched-normal WGS alignments Context-only references	AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) Original source ↗ Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996) Retrieved: 2026-10-11T21:39:34Z	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `629921b1198f4a5290d191857d13f98e54a1d132d722caf0ac83805f7e24a40d` Hash scope: SHA-256 of the downloaded zip. Member SHA-256 values for the extracted tables: tables/Table1_HG008_primary_metrics.tsv df3ac2809164be08676c9a010d3c7324ca08998a4b3964d5fb0c7a2201445fd6; tables/Table2_HG008_variant_class_metrics.tsv 6fe473217eda2e9b87c5291d28ff6e14339107b1b88346a6f72e62473713ed4a; tables/Table4_HG008_sensitivity_all_region.tsv f838cab270034cc351c5fa0fd7442b7ca6318beca598640b988eaa3952123ef8 (each equals the archive's own SHA256SUMS entry). Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

2 source records and release history

Prospectively frozen external benchmarking reveals benchmark-context dependence in somatic variant calling · Original source · Research Square preprint rs-11210923 version 1, posted 2026-10-05; manuscript PDF (16 pages)
AmbioSpire P003/T001 publication source data and reproducibility package v1.0.0 (Zenodo) · Original source · Zenodo record 22998005, version 1.0.0, published 2026-09-27; file P003-T001-publication-data-v1.0.0-zenodo-final.zip (1,934,562 bytes, md5 a1fdab6108197602f07f72db77d9f996)

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: somatic-hg008-20261011-eval-majority-primary-indel

areas: dna-genomes
contexts: clinical_research
origin: author_reported
protocol: somatic-hg008-20261011-protocol-primary-indel
version: Primary source as retrieved 2026-10-11
comparison: protocol id: somatic-hg008-20261011-protocol-primary-indel; dataset version: HG008-T draft somatic small-variant benchmark v0.3; split: External test; procedure frozen on HCC1395 before HG008 truth access; population: One HG008 tumour-normal pair; inputs: Tumour and matched-normal WGS alignments; adaptation: Not reported; metric implementation: Exact normalised CHROM/POS/REF/ALT match of PASS calls within the region; aggregation: Single pair; 95% block-bootstrap interval on F1; budget: Not reported
source locator: Zenodo tables/Table2_HG008_variant_class_metrics.tsv, row 'Majority', Class 'INDEL'
missing metadata: comparison.adaptation: reason: inapplicable; note: No training or tuning on HG008; comparison.budget: reason: unreported

Related records

Suggest a correction