Published comparison; transcribed, not reproduced.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-10-10-6e93f504adfc · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
1 evaluation · 1 result. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DNABERT-2 (Manzo et al. 2025) | Protocol: Allelic reporter effect correlation in NPC (Manzo et al. 2025 Table 1) Dataset: NPC regulatory variant reporter data (Manzo et al. 2025) | −0.004 pearson-correlation unitless · higher Uncertainty: SE 0.007. Standard error as printed in brackets; its basis is not defined in the caption Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on NPC reporter variant effects regulatory-variant-20261009-protocol-manzo2025-npc-pearson Aggregation: Not reported Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants · Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' |
Source checking is not independent reproduction. Release 2026-10-10-6e93f504adfc.
regulatory-variant-20261009-protocol-manzo2025-npc-pearson
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Fine-tuned per cell line for enhancer versus control classification on 1 kb sequences (Table 2); variant effect is the log2 ratio of alternative to reference scores Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation As printed per cell line Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version As published Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs 1 kb reference and alternative sequences centred on the SNP Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Pearson correlation of predicted and measured log2 fold-change Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.population 14042 SNPs Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id regulatory-variant-20261009-protocol-manzo2025-npc-pearson Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split Per cell line Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin independent_paper Context-only references | Comparative Analysis of Deep Learning Models for Predicting Causative Regulatory Variants Table 1 row 'DNABERT-2', column 'NPC (14,042 SNPs)' Version: Genes 16(10):1223, published 2025-10-15; PMC12562713 full-text XML | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-10-6e93f504adfc · Record review: source checked
Stable ID: regulatory-variant-20261009-eval-manzo2025-npc-dnabert-2