PerturBench evaluation of Decoder on combination prediction on Norman19, Cosine similarity of log fold change, scored with Cosine similarity of log fold change.
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1 evaluation · 1 result. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Decoder | Task: PerturBench CB-COSINE: combination prediction on Norman19, Cosine similarity of log fold change Dataset subset: Norman19 (PerturBench split) | 0.73 ± 2 × 10 − 2 cosine_logfc fraction · higher Uncertainty: type: standard_deviation; value: 0.02 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePredict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds. Aggregation: Not reported PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis · Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) |
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Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds.
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10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Cosine similarity of log fold change Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id perturbench-task-cb-cosine Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Predict the effect of a pair of gene overexpressions from single perturbations, reported as the mean and one standard deviation over seeds. Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description PerturBench evaluation of Decoder on combination prediction on Norman19, Cosine similarity of log fold change, scored with Cosine similarity of log fold change. Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark perturbench-task-cb-cosine Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset perturbench-dataset-norman19 Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model perturbench-method-decoder Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Decoder on PerturBench CB-COSINE: combination prediction on Norman19, Cosine similarity of log fold change Context-only references | PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Table 3, row(Decoder), column(Cosine, log fold change (LogFC)) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: perturbench-evaluation-decoder-cb-cosine